A C D E F G H I J L M N O P R S T U V W 

A

add(Project) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
 
add(String, Role) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
 
addChild(DataSet) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
addDataSet(IDataSetId) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
addExperiment(IExperimentId) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
addMatchClause(SearchCriteria.MatchClause) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Add a new match clause.
addMaterial(IMaterialId) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
addMetaproject(Metaproject) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
addMetaproject(Metaproject) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
addMetaproject(Metaproject) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
addMetaproject(Metaproject) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
addPropertyType(PropertyType) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
 
addPropertyTypeGroup(PropertyTypeGroup) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
 
addSample(ISampleId) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
addSubCriteria(SearchSubCriteria) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Add a new sub search criteria.
addToMetaproject(String, IMetaprojectId, MetaprojectAssignmentsIds) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Adds given entities to an existing metaproject.
addUnofficialVocabularyTerm(String, TechId, String, String, String, Long) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Deprecated.
Because the parameters refer to an internal openBIS class (TechID).
addUnofficialVocabularyTerm(String, Long, NewVocabularyTerm) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Adds new unofficial terms to a vocabulary starting from specified ordinal + 1.
addVersion(RpcServiceInterfaceVersionDTO) - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
AndDataSetFilter - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
Combining filters by logical AND.
AndDataSetFilter(IDataSetFilter...) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.AndDataSetFilter
 
Attachment - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing an attachment.
Attachment(Attachment.AttachmentInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
 
Attachment.AttachmentInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
Attachment.AttachmentInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
AuthorizationFailureException - Exception in ch.systemsx.cisd.common.exceptions
A UserFailureException for authorization failure.
AuthorizationFailureException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.AuthorizationFailureException
 

C

callWithRetry() - Method in class ch.systemsx.cisd.common.api.retry.RetryCaller
 
ch.systemsx.cisd.common.api - package ch.systemsx.cisd.common.api
 
ch.systemsx.cisd.common.api.retry - package ch.systemsx.cisd.common.api.retry
 
ch.systemsx.cisd.common.api.retry.config - package ch.systemsx.cisd.common.api.retry.config
 
ch.systemsx.cisd.common.exceptions - package ch.systemsx.cisd.common.exceptions
 
ch.systemsx.cisd.openbis.generic.shared.api.v1 - package ch.systemsx.cisd.openbis.generic.shared.api.v1
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.filter - package ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.util - package ch.systemsx.cisd.openbis.generic.shared.api.v1.util
 
ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1 - package ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1
Proteomics Data API Facade
ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1 - package ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1
 
ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto - package ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto
Data Transfer Objects
compareTo(Attachment) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
 
COMPOUND - Static variable in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
Material identifier for a compound.
ConfigurationFailureException - Exception in ch.systemsx.cisd.common.exceptions
The ConfigurationFailureException is the super class of all exceptions that have their cause in an inappropriate configuration of the system.
ConfigurationFailureException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
 
ConfigurationFailureException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
 
ControlledVocabularyPropertyType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ControlledVocabularyPropertyType(ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
 
ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
 
ControlledVocabularyPropertyType.VocabularyTerm - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ControlledVocabularyPropertyType.VocabularyTerm(String, String, Long, Boolean, EntityRegistrationDetails) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.VocabularyTerm
 
convertPatternListToString(List<String>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetTypeFilter
Takes a List of patterns and serializes them to a single string that this class can later reread.
create(T) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
Creates a new result with status StatusFlag.OK and resultOrNull.
create(String, String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.FacadeFactory
Creates a facade for specified server URL, user Id, and password.
create(String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.FacadeFactory
Creates a facade for specified url and sessionToken.
createAnyFieldMatch(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against any property or attribute.
createAnyPropertyMatch(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against any property.
createAttributeMatch(SearchCriteria.MatchClauseAttribute, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against a specific attribute.
createDataSetChildCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createDataSetContainerCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createDataSetParentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createError(boolean) - Static method in class ch.systemsx.cisd.common.exceptions.Status
Create an error.
createError(boolean, String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createError() - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createError(String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createError(String, Object...) - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createError(boolean) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
Create an error.
createError(boolean, String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
createError() - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
createError(String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
createExperimentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createMasqueradingExceptionIfNeeded(Exception, Collection<String>) - Static method in class ch.systemsx.cisd.common.exceptions.ExceptionUtils
Analyzes given exception and makes it independent to packages outside the specified collection or java.lang, ch.systemsx.cisd.common.
createMetaproject(String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Creates a new metaproject.
createPropertyMatch(String, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against a specific property.
createProxy(T) - Static method in class ch.systemsx.cisd.common.api.retry.RetryProxyFactory
 
createRetriableError() - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createRetriableError(String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createRetriableError(String, Object...) - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createRetriableError() - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
createRetriableError(String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
createSampleChildCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createSampleContainerCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createSampleCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createSampleParentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createTimeAttributeMatch(SearchCriteria.MatchClauseTimeAttribute, SearchCriteria.CompareMode, String, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against registration or modification date.

D

DataSet - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a data set.
DataSet(DataSet.DataSetInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Creates a new instance with the provided initializer
DataSet - Class in ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto
Date Set bean with properties, children and parents.
DataSet() - Constructor for class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
DataSet.Connections - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DataSet.DataSetInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new data set instance.
DataSet.DataSetInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
DataSetCodeId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
Identifies a data set by code.
DataSetCodeId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetCodeId
 
DataSetFetchOption - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DataSetFetchOptions - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DataSetFetchOptions() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOptions
 
DataSetFetchOptions(DataSetFetchOption...) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOptions
 
DataSetKind - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Enumeration of all possible data set kinds.
DataSetTechIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
Identifies a data set by tech id.
DataSetTechIdId(Long) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetTechIdId
 
DataSetType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a data set type.
DataSetType(DataSetType.DataSetTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
Creates a new instance with the provided initializer
DataSetType.DataSetTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new DataSetType instance.
DataSetType.DataSetTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
DataSetTypeFilter - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A class that filters out data set types based on a whitelist or blacklist.
DataSetTypeFilter(String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetTypeFilter
Constructor
DataStore - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DataStore(String, String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
 
DataStoreServerProcessingPluginInfo - Class in ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto
Information about a processing plugin on a Data Store Server (DSS).
DataStoreServerProcessingPluginInfo(String, String, List<String>) - Constructor for class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataStoreServerProcessingPluginInfo
Create a new instance for specified key, label and data set type codes.
DataStoreURLForDataSets - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
The data store URL for a set of data sets.
DataStoreURLForDataSets(String, String[]) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStoreURLForDataSets
 
DefaultRetryConfiguration - Class in ch.systemsx.cisd.common.api.retry.config
 
deleteMetaproject(String, IMetaprojectId) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Deletes an existing metaproject.

E

EntityRegistrationDetails - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A class that encapsulates the details about entity registration.
EntityRegistrationDetails(EntityRegistrationDetails.EntityRegistrationDetailsInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
EntityRegistrationDetails.EntityRegistrationDetailsInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize an EntityRegistrationDetails object.
EntityRegistrationDetails.EntityRegistrationDetailsInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
EntityType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Common attributes of all entity types.
EntityTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Generic part of all entity type initializers.
EnvironmentFailureException - Exception in ch.systemsx.cisd.common.exceptions
The EnvironmentFailureException is the super class of all exceptions that have their cause in the software or hardware environment of the system failing.
EnvironmentFailureException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
 
EnvironmentFailureException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
 
equals(Object) - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
equals(Object) - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
 
equals(Object) - Method in class ch.systemsx.cisd.common.exceptions.Status
 
equals(Object) - Method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetCodeId
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectIdentifierId
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectPermIdId
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectTechIdId
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.PropertyKey
 
error() - Static method in exception ch.systemsx.cisd.common.exceptions.InternalErr
 
error(String) - Static method in exception ch.systemsx.cisd.common.exceptions.InternalErr
 
error(Object) - Static method in exception ch.systemsx.cisd.common.exceptions.InternalErr
 
escape(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Returns a String where those characters that Lucene expects to be escaped are escaped by a preceding \.
ExceptionUtils - Class in ch.systemsx.cisd.common.exceptions
Provides utilities for manipulating and examining Throwable objects.
ExceptionWithStatus - Exception in ch.systemsx.cisd.common.exceptions
 
ExceptionWithStatus(Status) - Constructor for exception ch.systemsx.cisd.common.exceptions.ExceptionWithStatus
 
ExceptionWithStatus(Status, Exception) - Constructor for exception ch.systemsx.cisd.common.exceptions.ExceptionWithStatus
 
Experiment - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing an experiment.
Experiment(Experiment.ExperimentInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Creates a new instance with the provided initializer
Experiment - Class in ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto
Experiment bean with properties.
Experiment() - Constructor for class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
Experiment.ExperimentInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new experiment instance.
Experiment.ExperimentInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
ExperimentIdentifierId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment
Identifies an experiment by identifier.
ExperimentIdentifierId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment.ExperimentIdentifierId
 
ExperimentPermIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment
Identifies an experiment by perm id.
ExperimentPermIdId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment.ExperimentPermIdId
 
ExperimentTechIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment
Identifies an experiment by tech id.
ExperimentTechIdId(Long) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment.ExperimentTechIdId
 
ExperimentType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing an experiment type.
ExperimentType(ExperimentType.ExperimentTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ExperimentType
Creates a new instance with the provided initializer
ExperimentType.ExperimentTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new ExperimentType instance.
ExperimentType.ExperimentTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ExperimentType.ExperimentTypeInitializer
 

F

FacadeFactory - Class in ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1
FacadeFactory() - Constructor for class ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.FacadeFactory
 
FileExistsException - Exception in ch.systemsx.cisd.common.exceptions
An exception indicating that an output file already exists.
FileExistsException(File) - Constructor for exception ch.systemsx.cisd.common.exceptions.FileExistsException
 
filterDataSetsVisibleToUser(String, List<DataSet>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns a filtered list of allDataSets containing those data sets which are visible to userId.
filterDataSetTypes(List<DataSetType>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetTypeFilter
 
filterExperimentsVisibleToUser(String, List<Experiment>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns a filtered list of allExperiments containing those experiments which are visible to userId.
filterSamplesVisibleToUser(String, List<Sample>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns a filtered list of allSamples containing those samples which are visible to userId.
fromTemplate(String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
Creates an ConfigurationFailureException using a Formatter.
fromTemplate(Throwable, String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
Creates an ConfigurationFailureException using a Formatter.
fromTemplate(String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
Creates an EnvironmentFailureException using a Formatter.
fromTemplate(Throwable, String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
Creates an EnvironmentFailureException using a Formatter.
fromTemplate(String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
Creates an InvalidExternalDataException using a Formatter.
fromTemplate(Throwable, String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
Creates an InvalidExternalDataException using a Formatter.
fromTemplate(String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.UserFailureException
Creates an UserFailureException using a Formatter.
fromTemplate(Throwable, String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.UserFailureException
Creates an UserFailureException using a Formatter.

G

GENE - Static variable in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
Material identifier for a gene.
generateCode(String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Generate Code.
getAttachmentHolderId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
getAttachmentHolderId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
Returns the id of the entity holding this attachment.
getAttribute() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.AttributeMatchClause
Return the code of the attribute to compare against.
getAttribute() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
Return the code of the attribute to compare against.
getAugmentedCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
getBiologicalExperiment() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
getBiologicalExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
getBiologicalSampleID() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
getBiologicalSampleIdentifier() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
getBiologicalSampleProperties() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
getChildren() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Return the children.
getChildren() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getChildren() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
getChildrenCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getChildrenCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Return the children codes.
getChildrenJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getClassName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Returns the data set code;
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
Returns the unique entity type code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Returns the experiment code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetCodeId
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.MaterialCodeAndTypeCodeId
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Return the term's code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Returns the project code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
Return the code of this property type.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
Returns role code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
Returns the space code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns the vocabulary code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
getCode() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
getCode() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
getCodePrefix() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
Returns code prefix used to create sample code automatically.
getCodePrefix() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
getCompareMode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
 
getContainedDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getContainedDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getContainerOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getContainerOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getCriteria() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
getDataSetCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStoreURLForDataSets
A set of data sets that can be found in this data store.
getDataSetKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
getDataSetKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
Returns the kind of data sets of this type.
getDataSetMetaData(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns meta data for all specified data sets.
getDataSetMetaData(String, List<String>, EnumSet<DataSetFetchOption>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns meta data for all specified data sets.
getDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
 
getDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
getDataSets() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
getDataSetTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getDataSetTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getDatasetTypeCodes() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataStoreServerProcessingPluginInfo
Returns a list data set type codes for all data sets for which the plugin is available.
getDataStoreBaseURLs(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns the download URL for the data store of specified data sets.
getDataStoreURL() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStoreURLForDataSets
The base URL of the data store.
getDataType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
getDataType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
getDefaultPutDataStoreBaseURL(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns the URL for the default data store server for this openBIS AS.
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
Returns the description given by the user when uploading this attachment.
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
Returns the description or null if undefined.
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
 
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Return the term's description.
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Returns the project description.
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
Return the extended description.
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
 
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns the vocabulary description.
getDesiredValue() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
 
getDownloadLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
getDownloadLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
Returns the download link.
getDownloadUrl() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
 
getEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getEndOfChain(Throwable) - Static method in class ch.systemsx.cisd.common.exceptions.ExceptionUtils
Returns the last Throwable of a chain of throwables.
getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Returns the identifier of the Experiment to which this data set belongs.
getExperimentIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getExperimentIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getExperiments() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
 
getExperiments() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
getExperimentTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getExperimentTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Returns the experiment type code.
getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getExternalDataSetCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getExternalDataSetCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getExternalDataSetLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getExternalDataSetLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getFieldType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
The field type this MatchClause matches against.
getFileName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
getFileName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
Returns the file name of this attachment.
getFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getFlag() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
getHostUrl() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
 
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Returns tech id of the data set.
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Returns the experiment id.
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
 
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Returns the techical database id of the project.
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample id.
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns the vocabulary id.
getId() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
getId() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
getId() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.PropertyKey
Returns the ID.
getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Returns the experiment identifier.
getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectIdentifierId
 
getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
 
getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample identifier;
getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getInstance() - Static method in class ch.systemsx.cisd.common.api.retry.config.DefaultRetryConfiguration
 
getInterfaceName() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
The name of this interface used for identification.
getInterfaceName() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
The name of this interface used for identification.
getKey() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataStoreServerProcessingPluginInfo
Returns a unique key of the plugin.
getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Return the term's label.
getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
Return the label shown in forms.
getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
getLabel() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataStoreServerProcessingPluginInfo
Returns a human readable name of the plugin.
getLabel() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.PropertyKey
Returns the label.
getLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getLatestDataSetRegistrationDates() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
getMainDataSetPath() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
getMainDataSetPath() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
Returns main data set path if defined.
getMainDataSetPattern() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
getMainDataSetPattern() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
Returns main data set pattern if defined.
getMajorVersion() - Method in interface ch.systemsx.cisd.common.api.IRpcService
Returns the major version of the server side interface.
getMajorVersion() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
The major version of the interface.
getMatchClauses() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Get a list of MatchClause objects this SearchCriteria will match against.
getMaterialByCodes(String, List<MaterialIdentifier>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns the materials with specified identifiers (i.e.
getMaterialCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getMaterialCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
getMaterialProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
 
getMaterialProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getMaterials() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
 
getMaterials() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
getMaterialTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
Returns the code of this material type.
getMaterialTypeIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getMaterialTypeIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
getMaximumNumberOfRetries() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
 
getMaximumNumberOfRetries() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
getMessage() - Method in exception ch.systemsx.cisd.common.exceptions.NotImplementedException
Returns the error message for this exception.
getMetaproject() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
 
getMetaproject(String, IMetaprojectId) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all entities tagged with given metaproject.
getMetaprojectOnBehalfOfUser(String, IMetaprojectId, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all entities tagged with given metaproject for specified user.
getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
 
getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getMetaprojectsJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getMethodName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
 
getMinorVersion() - Method in interface ch.systemsx.cisd.common.api.IRpcService
Returns the minor version of this server side interface.
getMinorVersion() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
The major version of the interface.
getModificationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getModificationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getModifierEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getModifierEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getModifierFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getModifierFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getModifierLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getModifierLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getModifierUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getModifierUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getMsInjectionSampleCode() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
getMsInjectionSampleID() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
getMsInjectionSampleProperties() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
getMsInjectionSampleRegistrationDate() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
Returns the name of this group (section).
getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
 
getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
 
getOperator() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Gets the operator for combining MatchClause objects.
getOrdinal() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
getParentCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getParentCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Return the parent codes.
getParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Return the parents.
getParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getParents() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
getParentsJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Returns the experiment permanent id.
getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectPermIdId
 
getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Returns the permanent id of the project.
getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample permanent id.
getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getPreviousTermOrdinal() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Return the position of predecessor term in the vocabulary.
getProjectCode() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
getProjects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
Returns all projects of this space.
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getProperties() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
getProperties() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
getPropertiesJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getPropertyCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.PropertyMatchClause
Return the code of the property to compare against.
getPropertyTypeGroups() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
Return the grouped property types for this entity type.
getPropertyTypeGroups() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
 
getPropertyTypes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
 
getPropertyTypes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
 
getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
Return the registration details.
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Return the data set registration details.
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Return the vocabulary term registration details.
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Return the sample registration details.
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
Return the vocabulary term registration details.
getRetrievedConnections() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getRetrievedConnections() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getRetrievedFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns fetch options used to retrieved this sample object.
getRetrievedFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getRoles(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
Returns all access roles the specified user has on this space.
getRootExceptionClassName() - Method in exception ch.systemsx.cisd.common.exceptions.MasqueradingException
 
getSampleIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getSampleIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getSamples() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
 
getSamples() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
getSampleTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample type code.
getSampleTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getSampleTypeId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample type id.
getSampleTypeId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getService(RpcServiceInterfaceVersionDTO, Class<T>, String, boolean) - Method in interface ch.systemsx.cisd.common.api.IRpcServiceFactory
Get a proxy to the RPC service interface specified by ifaceVersion.
getSessionToken() - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Return the session token for the logged-in user.
getSettings() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.WebAppSettings
 
getSimpleClassName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
 
getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Returns the space code.
getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the space code.
getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getSpaceCode() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
getStatus() - Method in exception ch.systemsx.cisd.common.exceptions.ExceptionWithStatus
 
getSubCriterias() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Get a list of SearchSubCriteria objects for this SearchCriteria.
getSupportedInterfaces(String, boolean) - Method in interface ch.systemsx.cisd.common.api.IRpcServiceFactory
Get the RPC service interfaces supported by the server.
getSupportedInterfaces() - Method in interface ch.systemsx.cisd.common.api.IRpcServiceNameServer
Return a collection of interfaces supported by this server
getTargetEntityKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
getTechId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectTechIdId
 
getTerms() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
 
getTerms() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns the vocabulary terms.
getTimeZone() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
Return the time zone to compare against.
getTitle() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
getTitle() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
Returns the title given by the user when uploading this attachment.
getType() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
getTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.MaterialCodeAndTypeCodeId
 
getUrlSuffix() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
The suffix added to the server's URL to produce the URL for this interface.
getUrlTemplate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns a URL template (e.g a search query) that can display additional information for concrete vocabulary terms.
getUserDisplaySettings(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
 
getUserEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getUserFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getUserLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getUsers() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
Returns the set of all users that have a role in this space.
getValidationPluginInfo() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
 
getValidationPluginInfo() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
 
getVersion() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
getVersion() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
Returns the version of this attachment.
getVersions() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
getVocabulary() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
 
getVocabularyTermsMap(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
getWaitingTimeBetweenRetries() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
 
getWaitingTimeBetweenRetries() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
getWaitingTimeBetweenRetriesIncreasingFactor() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
 
getWaitingTimeBetweenRetriesIncreasingFactor() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
getWebAppId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.WebAppSettings
 
getWebAppSettings(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Returns the persistent settings for a given custom web app.

H

hashCode() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
hashCode() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
 
hashCode() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
hashCode() - Method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetCodeId
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectIdentifierId
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectPermIdId
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectTechIdId
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
hashCode() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.PropertyKey
 
HighLevelException - Exception in ch.systemsx.cisd.common.exceptions
An exception that is "high-level" in the sense that we have a pretty good understanding what the failure means in the context where the exception has been thrown.

I

IDataSetFilter - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
Interface filters of DataSet instances.
IDataSetId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
Holds information that uniquely identifies a data set in openBIS.
IExperimentId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment
Holds information that uniquely identifies an experiment in openBIS.
IGeneralInformationChangingService - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1
Service for changing general informations.
IGeneralInformationService - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1
Service for retrieving general informations.
IMaterialId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material
Holds information that uniquely identifies a material in openBIS.
IMetaprojectId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject
Holds information that uniquely identifies a metaproject in openBIS.
IncompatibleAPIVersionsException - Exception in ch.systemsx.cisd.common.api
Exception that is thrown if the client can not talk to the server because of API version incompatibility.
IncompatibleAPIVersionsException(int, int) - Constructor for exception ch.systemsx.cisd.common.api.IncompatibleAPIVersionsException
 
InternalErr - Exception in ch.systemsx.cisd.common.exceptions
Exception representing internal error in the program caused by programmer error.
InvalidAuthenticationException - Exception in ch.systemsx.cisd.common.exceptions
Exception to be thrown when authentication of a service at another service fails.
InvalidAuthenticationException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException
 
InvalidAuthenticationException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException
 
InvalidExternalDataException - Exception in ch.systemsx.cisd.common.exceptions
Data provided to the system from another system is invalid.
InvalidExternalDataException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
 
InvalidExternalDataException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
 
InvalidSessionException - Exception in ch.systemsx.cisd.common.exceptions
This UserFailureException extension signals that a session has expired.
InvalidSessionException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidSessionException
 
invoke(MethodInvocation) - Method in class ch.systemsx.cisd.common.api.retry.RetryInterceptor
 
IObjectId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id
Holds information that uniquely identifies an object in openBIS.
IProjectId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project
Holds information that uniquely identifies a project in openBIS.
IProteomicsDataApiFacade - Interface in ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1
Facade for openBIS proteomics data service to be used by a proteomics pipeline server like p-grade.
IProteomicsDataService - Interface in ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1
Interface used by IProteomicsDataApiFacade.
IRpcService - Interface in ch.systemsx.cisd.common.api
The most generic interface for RPC invocations into openBIS.
IRpcServiceFactory - Interface in ch.systemsx.cisd.common.api
A factory for creating proxies to RPC services on a data store server.
IRpcServiceNameServer - Interface in ch.systemsx.cisd.common.api
An Interface for finding out about the IRpcService interfaces supported by a server.
ISampleId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
Holds information that uniquely identifies a sample in openBIS.
isAutomaticCodeGeneration() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
Returns true if the sample code is created automatically.
isAutomaticCodeGeneration() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
isChosenFromList() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Return true if the vocabulary was chosen from a list.
isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
isDeletionDisallowed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
isDeletionDisallowed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
Returns true if deletion for data sets of this type are disallowed.
isDinamic() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
isDinamic() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
isError() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
isInternalNamespace() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns true if the vocabulary is in the internal openBIS namespace.
isLinkDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
isLinkDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
isListable() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
Returns true if this is a sample type of listable samples.
isListable() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
isManaged() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
isManaged() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
isManagedInternally() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns true if the vocabulary is managed internally.
isMandatory() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
isMandatory() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
isNonRetriableError() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
isOfficial() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
isOK() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
isRetriable() - Method in exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
Returns the assessment of the subsystem throwing the exception whether the failure could be temporarily and thus retrying the operation (on a higher level) could possibly help to cure the problem.
isRetriable() - Method in exception ch.systemsx.cisd.common.exceptions.HighLevelException
Returns the assessment of the subsystem throwing the exception whether the failure could be temporarily and thus retrying the operation (on a higher level) could possibly help to cure the problem.
isRetriable(Throwable) - Static method in exception ch.systemsx.cisd.common.exceptions.HighLevelException
Returns the assessment of the subsystem throwing the exception whether the failure could be temporarily and thus retrying the operation (on a higher level) could possibly help to cure the problem.
isRetriableError() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
isSessionActive(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns true if session with the specified token is still active, false otherwise.
isShowContainer() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
Returns true if for samples of this type the container field is shown in edit/registration form.
isShowContainer() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
isShowInEditViews() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
isShowInEditViews() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
isShowParentMetaData() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
Returns true if meta data of parents of samples of this type should be shown.
isShowParentMetaData() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
isShowParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
Returns true if for sample of this type the parents field is shown in edit/registration form.
isShowParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
isSpaceLevel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
Returns true if this role is for a particular space.
isStorageConfirmed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
isStorageConfirmed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
isStub() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
isStub() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
isStub() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
isUniqueSubcodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
Returns true if the sub code of samples of this type has to be unique.
isUniqueSubcodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 

J

JSON_SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
URL where the service is exposed via JSON interface.
JSON_SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
 
JsonPropertyUtil - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.util
 
JsonPropertyUtil() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.util.JsonPropertyUtil
 

L

listAttachmentsForExperiment(String, IExperimentId, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Lists attachments of specified experiment.
listAttachmentsForProject(String, IProjectId, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Lists attachments of specified project.
listAttachmentsForSample(String, ISampleId, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Lists attachments of specified sample.
listDataSets(String, List<Sample>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all data sets attached to the given samples.
listDataSets(String, List<Sample>, EnumSet<DataSet.Connections>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all data sets attached to the given samples with connections.
listDataSetsByExperiment(String, long) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Returns all data sets of specified experiment which the specified user is allowed to read.
listDataSetsByExperiment(String, String, long) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Returns all data sets of specified experiment which the specified user is allowed to read.
listDataSetsForExperiments(String, List<Experiment>, EnumSet<DataSet.Connections>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all data sets attached to the given experiments with connections.
listDataSetsForExperimentsOnBehalfOfUser(String, List<Experiment>, EnumSet<DataSet.Connections>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all data sets attached to the given experiments with connections that the user userId is allowed to see.
listDataSetsForSample(String, Sample, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return the data sets attached to the specified sample, optionally including child samples.
listDataSetsOnBehalfOfUser(String, List<Sample>, EnumSet<DataSet.Connections>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all data sets attached to the given samples with connections that the user userId is allowed to see.
listDataSetTypes(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all data set types.
listDataStores(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Lists all DSS server registered this openBIS server instance.
listDataStoreServerProcessingPluginInfos() - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Lists all processing plugins on DSS.
listDataStoreServerProcessingPluginInfos(String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Lists all processing plugins on DSS.
listExperiments(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all experiments of the given type that belong to the supplied projects.
listExperiments(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all experiments matching a specified set of identifiers.
listExperiments(String, String, String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Returns all experiments of specified type which the specified user is allowed to read.
listExperiments(String, String, String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Returns all experiments of specified type which the specified user is allowed to read.
listExperimentsHavingDataSets(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all experiments of the given type that belong to the supplied projects and have registered data sets.
listExperimentsHavingSamples(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all experiments of the given type that belong to the supplied projects and have registered samles.
listExperimentTypes(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all experiment types.
listMetaprojects(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Lists all metaprojects belonging to current user.
listMetaprojectsOnBehalfOfUser(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Lists all metaprojects belonging to specified user.
listNamedRoleSets(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all named role sets.
listProjects(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all available projects.
listProjects(String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Returns all projects where the specified user has USER access rights.
listProjectsOnBehalfOfUser(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all available projects that a particular user is allowed to see.
listPropertyTypes(String, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Lists property types.
listRawDataSamples(String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Returns all samples of type MS_INJECTION in space MS_DATA which have a parent sample which the specified user is allow to read.
listRawDataSamples(String, String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Returns all samples of type MS_INJECTION in space MS_DATA which have a parent sample which the specified user is allowed to read.
listSamplesForExperiment(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all samples that belong to the supplied experiment.
listSamplesForExperimentOnBehalfOfUser(String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all samples that belong to the supplied experiment that are visible to user userId.
listSampleTypes(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all sample types.
listSearchExperiments(String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Returns all experiments of type MS_SEARCH which the specified user is allowed to read.
listSearchExperiments(String, String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Deprecated.
listSpacesWithProjectsAndRoleAssignments(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all spaces of specified database instance enriched with their projects and role assignments.
listVocabularies(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all available vocabularies together with the contained terms.
logout(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Logout the session with the specified session token.
logout() - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Logs current user out.
logout(String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Logout the session with the specified session token.

M

main(String[]) - Static method in class ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.ProteomicsDataApiTest
 
MasqueradingException - Exception in ch.systemsx.cisd.common.exceptions
A RuntimeException extension which almost clones given rootException without saving it as cause.
MasqueradingException(Exception, String) - Constructor for exception ch.systemsx.cisd.common.exceptions.MasqueradingException
 
MasqueradingException(Exception) - Constructor for exception ch.systemsx.cisd.common.exceptions.MasqueradingException
 
Material - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
Material(Material.MaterialInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
 
Material.MaterialInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
Material.MaterialInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
MaterialCodeAndTypeCodeId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material
Identifies a material by code and material type code.
MaterialCodeAndTypeCodeId(String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.MaterialCodeAndTypeCodeId
 
MaterialIdentifier - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
MaterialIdentifier(MaterialTypeIdentifier, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
MaterialTechIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material
Identifies a material by tech id.
MaterialTechIdId(Long) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.MaterialTechIdId
 
MaterialTypeIdentifier - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
duplicated from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.MaterialTypeIdentifier
MaterialTypeIdentifier(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
 
MetaprojectAssignments - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
MetaprojectAssignments() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
 
MetaprojectAssignmentsIds - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
MetaprojectAssignmentsIds() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
MetaprojectIdentifierId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject
Identifies a metaproject by identifier.
MetaprojectIdentifierId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject.MetaprojectIdentifierId
 
MetaprojectIdentifierId(MetaprojectIdentifier) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject.MetaprojectIdentifierId
 
MetaprojectIdentifierId(String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject.MetaprojectIdentifierId
 
MetaprojectTechIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject
Identifies a metaproject by tech id.
MetaprojectTechIdId(Long) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject.MetaprojectTechIdId
 
MetaprojectTechIdId(TechId) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject.MetaprojectTechIdId
 
MinimalMinorVersion - Annotation Type in ch.systemsx.cisd.common.api
The minimal minor version that a service needs to have in order to possess this method.
MsInjectionDataInfo - Class in ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto
Informations about an MS_INJECTION sample and its related biological sample.
MsInjectionDataInfo() - Constructor for class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 

N

NewVocabularyTerm - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A value object representing a new vocabulary term to be created by the openBIS backend.
NewVocabularyTerm() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
 
NotImplementedException - Exception in ch.systemsx.cisd.common.exceptions
This is an extension to the RuntimeException for unimplemented methods.
NotImplementedException() - Constructor for exception ch.systemsx.cisd.common.exceptions.NotImplementedException
 
NotImplementedException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.NotImplementedException
 
NotImplementedException(Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.NotImplementedException
 
NotImplementedException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.NotImplementedException
 
NotImplementedException.StackTraceExtractor - Class in ch.systemsx.cisd.common.exceptions
An automatic stack trace extractor.
NotImplementedException.StackTraceExtractor(Throwable) - Constructor for class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
 
NotImplementedException.StackTraceExtractor(Throwable, int) - Constructor for class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
 

O

ObjectIdentifierId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id
Base class for ids that identify objects by identifier.
ObjectIdentifierId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectIdentifierId
 
ObjectPermIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id
Base class for ids that identify objects by perm id.
ObjectPermIdId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectPermIdId
 
ObjectTechIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id
Base class for ids that identify objects by tech id.
ObjectTechIdId(Long) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectTechIdId
 
OK - Static variable in class ch.systemsx.cisd.common.exceptions.Status
The status indicating that the operation went fine.
OLIGO - Static variable in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
Material identifier for an siRNA-nucleotide

P

pass(DataSet) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.AndDataSetFilter
 
pass(DataSet) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.IDataSetFilter
Returns true if the specified data set passes the filter.
pass(DataSet) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.PropertiesBasedDataSetFilter
 
pass(DataSet) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.TypeBasedDataSetFilter
Return true if the data set type code of the specified data set matches the regular expression provided as constructor argument.
PREFFERED_BEAN_NAME - Static variable in interface ch.systemsx.cisd.common.api.IRpcServiceNameServer
The preferred name of the bean in Spring
PREFFERED_SERVICE_NAME - Static variable in interface ch.systemsx.cisd.common.api.IRpcServiceNameServer
The preferred name of the bean in Spring
PREFFERED_URL_SUFFIX - Static variable in interface ch.systemsx.cisd.common.api.IRpcServiceNameServer
The preferred suffix of the url of the name server service
processDataSets(String, String, List<String>) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Processes the specified data sets by the DSS processing plug-in of specified key for the specified user.
processDataSets(String, String, String, List<String>) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Processes the specified data sets by the DSS processing plug-in of specified key for the specified user.
processingRawData(String, String, long[], String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Deprecated.
processingRawData(String, String, String, long[], String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Deprecated.
processProteinResultDataSets(String, String, String, String, long[]) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Processes the data sets of specified experiments by the DSS processing plug-in of specified key for the specified user.
processProteinResultDataSets(String, String, String, String, long[]) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Processes the data sets of specified experiments by the DSS processing plug-in of specified key for the specified user.
processSearchData(String, String, long[]) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.IProteomicsDataApiFacade
Deprecated.
processSearchData(String, String, String, long[]) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Deprecated.
Project - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a project.
Project(Long, String, String, String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Creates a new instance for the specified tech id, perm id, space code and project code.
Project(String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Creates a new instance for the specified space code and project code.
Project(String, String, EntityRegistrationDetails) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Creates a new instance for the specified tech id, perm id, space code and project code.
Project(Long, String, String, String, String, EntityRegistrationDetails) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Creates a new instance for the specified space code and project code.
ProjectIdentifierId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project
Identifies a project by identifier.
ProjectIdentifierId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project.ProjectIdentifierId
 
ProjectPermIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project
Identifies a project by perm id.
ProjectPermIdId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project.ProjectPermIdId
 
ProjectTechIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project
Identifies a project by tech id.
ProjectTechIdId(Long) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project.ProjectTechIdId
 
PropertiesBasedDataSetFilter - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
Filter based on data set properties.
PropertiesBasedDataSetFilter(Map<String, String>) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.PropertiesBasedDataSetFilter
 
PropertyKey - Class in ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto
Immutable class of a property key.
PropertyKey(String, String) - Constructor for class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.PropertyKey
Creates a new instance for specified ID and label.
PropertyType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a property type.
PropertyType(PropertyType.PropertyTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
Creates a new instance with the provided initializer
PropertyType.PropertyTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new data set instance.
PropertyType.PropertyTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
PropertyTypeGroup - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a data set type.
PropertyTypeGroup(PropertyTypeGroup.PropertyTypeGroupInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
Creates a new instance with the provided initializer
PropertyTypeGroup.PropertyTypeGroupInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new data set instance.
PropertyTypeGroup.PropertyTypeGroupInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
 
ProteomicsDataApiTest - Class in ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1
Example of usage of Proteomics Data API.
ProteomicsDataApiTest() - Constructor for class ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.ProteomicsDataApiTest
 
putProperty(String, String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
putProperty(String, String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
putProperty(String, String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 

R

registerSamples(String, String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Registers samples parsing a file stored on the HTTP Session.
removeFromMetaproject(String, IMetaprojectId, MetaprojectAssignmentsIds) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Removes given entities from an existing metaproject.
reset() - Method in class ch.systemsx.cisd.common.api.retry.config.DefaultRetryConfiguration
 
Retry - Annotation Type in ch.systemsx.cisd.common.api.retry
 
RetryCaller<T,E extends java.lang.Throwable> - Class in ch.systemsx.cisd.common.api.retry
 
RetryCaller() - Constructor for class ch.systemsx.cisd.common.api.retry.RetryCaller
 
RetryCaller(RetryConfiguration) - Constructor for class ch.systemsx.cisd.common.api.retry.RetryCaller
 
RetryCaller(RetryConfiguration, ISimpleLogger) - Constructor for class ch.systemsx.cisd.common.api.retry.RetryCaller
 
RetryConfiguration - Interface in ch.systemsx.cisd.common.api.retry.config
 
RetryInterceptor - Class in ch.systemsx.cisd.common.api.retry
 
RetryInterceptor() - Constructor for class ch.systemsx.cisd.common.api.retry.RetryInterceptor
 
RetryProxy - Interface in ch.systemsx.cisd.common.api.retry
 
RetryProxyFactory - Class in ch.systemsx.cisd.common.api.retry
 
RetryProxyFactory() - Constructor for class ch.systemsx.cisd.common.api.retry.RetryProxyFactory
 
Role - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing an authorization role.
Role(String, boolean) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
Creates a new instance from specified code and space level flag.
RpcServiceInterfaceDTO - Class in ch.systemsx.cisd.common.api
Describes an RPC interface supported by the server.
RpcServiceInterfaceDTO(String) - Constructor for class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
RpcServiceInterfaceVersionDTO - Class in ch.systemsx.cisd.common.api
Describes an RPC interface supported by the server.
RpcServiceInterfaceVersionDTO(String, String, int, int) - Constructor for class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
 

S

Sample - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a sample.
Sample(Sample.SampleInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Creates a new instance with the provided initializer
Sample.SampleInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new sample instance.
Sample.SampleInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
SampleFetchOption - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
SampleIdentifierId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
Identifies a sample by identifier.
SampleIdentifierId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample.SampleIdentifierId
 
SamplePermIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
Identifies a sample by perm id.
SamplePermIdId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample.SamplePermIdId
 
SampleTechIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
Identifies a sample by tech id.
SampleTechIdId(Long) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample.SampleTechIdId
 
SampleType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a sample type.
SampleType(SampleType.SampleTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
Creates a new instance with the provided initializer
SampleType.SampleTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new SampleType instance.
SampleType.SampleTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
SearchableEntityKind - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
An enum listing the different kinds of entities that are searchable.
SearchCriteria - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A (mutable) object representing the specification of a search.
SearchCriteria() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
 
SearchCriteria.AnyFieldMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A MatchClause for checking that any of the properties or attributes equals a desired value.
SearchCriteria.AnyPropertyMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A MatchClause for checking that any of the properties equals a desired value.
SearchCriteria.AttributeMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A MatchClause for checking that an attribute equals a desired value.
SearchCriteria.CompareMode - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
SearchCriteria.MatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A specification of one field (either property or attribute) and desired value for that field.
SearchCriteria.MatchClauseAttribute - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
An enum listing the different attributes that can be compared against.
SearchCriteria.MatchClauseFieldType - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
An enum listing the different field types that can be compared against.
SearchCriteria.MatchClauseTimeAttribute - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
An enum listing the different attributes containing time values that can be compared against.
SearchCriteria.PropertyMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A MatchClause for checking that a property equals a desired value.
SearchCriteria.SearchOperator - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Operators for combining MatchClause objects.
SearchCriteria.TimeAttributeMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A MatchClause for comparing a time attribute to a specified value.
searchForDataSets(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all data sets matching specified search criteria.
searchForDataSetsOnBehalfOfUser(String, SearchCriteria, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all data sets matching specified search criteria and visible to user userId.
searchForExperiments(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all experiments matching specified search criteria.
searchForMaterials(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all material fulfilling specified search criteria.
searchForSamples(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all samples that match the search criteria.
searchForSamples(String, SearchCriteria, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all samples that match the search criteria.
searchForSamplesOnBehalfOfUser(String, SearchCriteria, EnumSet<SampleFetchOption>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all samples that match the search criteria and that a particular user is allowed to see.
SearchSubCriteria - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A specification of criteria for a subquery about a connected entity.
SERVER_URL - Static variable in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Service part of the URL to access this service remotely.
SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Name of this service for which it is registered at the RPC name server.
SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Name of this service for which it is registered at the RPC name server.
SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Name of this service for which it is registered at the RPC name server.
SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Application part of the URL to access this service remotely.
SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Application part of the URL to access this service remotely.
setAttachmentHolderId(IObjectId) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
setAutomaticCodeGeneration(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
setBiologicalExperiment(Experiment) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
setBiologicalExperimentIdentifier(String) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
setBiologicalSampleID(long) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
setBiologicalSampleIdentifier(String) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
setBiologicalSampleProperties(Map<PropertyKey, Serializable>) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
setChildReferences(List<Long>, Map<Long, Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setChildren(List<Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setChildrenCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setChosenFromList(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Set the term's code.
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
setCodePrefix(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
setContainedDataSets(List<DataSet>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setContainerDataSet(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setContainerOrNull(DataSet) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setDataSetKind(DataSetKind) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
setDataSets(List<DataSet>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
 
setDataSets(Set<DataSet>) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
setDataSetTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setDataType(DataTypeCode) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setDeletionDisallowed(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
 
setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Set the term's description.
setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setDinamic(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setDinamic(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
setDownloadLink(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
setEmail(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setExperimentIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setExperimentIdentifierOrNull(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setExperiments(List<Experiment>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
 
setExperimentTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setExternalDataManagementSystem(ExternalDataManagementSystem) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setExternalDataSetCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setExternalDataSetLink(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setFetchOptions(DataSetFetchOptions) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
setFileName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
setFirstName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setId(long) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
setId(long) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
setIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setInternalNamespace(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setIsStub(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setLabel(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Set the term's label.
setLabel(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setLastName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setLatestDataSetRegistrationDates(Map<String, Date>) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
setLinkDataSet(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setListable(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
setMainDataSetPath(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
setMainDataSetPattern(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
setManaged(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setManaged(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
setManagedInternally(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setMandatory(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setMaterialCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
setMaterialProperties(Map<String, Material>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
setMaterials(List<Material>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
 
setMaterialTypeIdentifier(MaterialTypeIdentifier) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
setMaximumNumberOfRetries(int) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
setMetaproject(Metaproject) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
 
setModificationDate(Date) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setModifierEmail(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setModifierFirstName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setModifierLastName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setModifierUserId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setMsInjectionSampleCode(String) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
setMsInjectionSampleID(long) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
setMsInjectionSampleProperties(Map<PropertyKey, Serializable>) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
setMsInjectionSampleRegistrationDate(Date) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.MsInjectionDataInfo
 
setName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
 
setOperator(SearchCriteria.SearchOperator) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Set the operator for combining MatchClause objects.
setParentCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setParentReferences(List<Long>, Map<Long, Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setParents(List<Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setPermId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setPermId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setPreviousTermOrdinal(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Set the position of predecessor term in the vocabulary.
setProjectCode(String) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
setProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
setProperties(Map<PropertyKey, Serializable>) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
setProperties(Map<PropertyKey, Serializable>) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
setRegistrationDate(Date) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setRegistrationDate(Date) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
setRegistrationDate(Date) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setRetrievedConnections(EnumSet<DataSet.Connections>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setRetrievedFetchOptions(EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setSampleIdentifierOrNull(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setSamples(List<Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
 
setSampleTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setSampleTypeId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setShowContainer(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
setShowInEditViews(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setShowInEditViews(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
setShowParentMetaData(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
setShowParents(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
setSpaceCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setSpaceCode(String) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.Experiment
 
setStorageConfirmed(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setStorageConfirmed(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
setStub(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setStub(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setTerms(List<ControlledVocabularyPropertyType.VocabularyTerm>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
 
setTerms(List<VocabularyTerm>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setTitle(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
setType(String) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
setUniqueSubcodes(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
 
setUrlTemplate(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setUserId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setValidationPluginInfo(ValidationPluginInfo) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
 
setVersion(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
setVocabulary(Vocabulary) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
 
setWaitingTimeBetweenRetries(int) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
setWaitingTimeBetweenRetriesIncreasingFactor(float) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
setWebAppSettings(String, WebAppSettings) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Sets the persistent settings for a given custom web app.
SpaceWithProjectsAndRoleAssignments - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Bean which represents a space, all its projects, and all its relevant role assignments
SpaceWithProjectsAndRoleAssignments(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
Creates a new instance for the specified code.
StaticRetryConfiguration - Class in ch.systemsx.cisd.common.api.retry.config
 
StaticRetryConfiguration() - Constructor for class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
Status - Class in ch.systemsx.cisd.common.exceptions
A class that holds the information about the status of an operation.
StatusFlag - Enum in ch.systemsx.cisd.common.exceptions
The status of an operation.
StatusWithResult<T> - Class in ch.systemsx.cisd.common.exceptions
A Status that can also hold a result.
SystemExitException - Exception in ch.systemsx.cisd.common.exceptions
Thrown by SystemExit instead of plain RuntimeException
SystemExitException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.SystemExitException
 

T

toLongOrNull(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.util.JsonPropertyUtil
 
toString() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
toString() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
 
toString() - Method in exception ch.systemsx.cisd.common.exceptions.MasqueradingException
 
toString() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
toString() - Method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ExperimentType
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetCodeId
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.MaterialCodeAndTypeCodeId
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectIdentifierId
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectPermIdId
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectTechIdId
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.WebAppSettings
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.AndDataSetFilter
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.PropertiesBasedDataSetFilter
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.TypeBasedDataSetFilter
 
toString() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.PropertyKey
Renders this key in the form <label>[<id>].
toStringOrNull(Long) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.util.JsonPropertyUtil
 
tryGetDataStoreBaseURL(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns the download URL for the data store of specified data set or null if such data set does not exist.
tryGetErrorMessage() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
tryGetResult() - Method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
Returns the result of the operation (may be null).
tryGetThrowableOfClass(Throwable, Class<T>) - Static method in class ch.systemsx.cisd.common.exceptions.ExceptionUtils
Returns the first found Throwable of given clazz from the exception chain of given throwable.
tryToAuthenticateAtRawDataServer(String, String) - Method in interface ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.IProteomicsDataService
Tries to authenticate specified user with specified password.
tryToAuthenticateForAllServices(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Tries to authenticate specified user with specified password.
TypeBasedDataSetFilter - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
Filter which will be passed only by data sets with a data set type code matching a certain regular expression.
TypeBasedDataSetFilter(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.TypeBasedDataSetFilter
Creates an instance for the specified regular expression.

U

UnknownLastChangedException - Exception in ch.systemsx.cisd.common.exceptions
Used to signal the error of getting last modification time of a store item
UnknownLastChangedException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.UnknownLastChangedException
 
updateMetaproject(String, IMetaprojectId, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Updates an existing metaproject.
updateSampleProperties(String, long, Map<String, String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
 
updateSamples(String, String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Updates samples parsing a file stored on the HTTP Session.
uploadedSamplesInfo(String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Returns information regarding the uploaded file without discarding it.
UserFailureException - Exception in ch.systemsx.cisd.common.exceptions
The UserFailureException is the super class of all exceptions that have their cause in an inappropriate usage of the system.
UserFailureException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.UserFailureException
 
UserFailureException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.UserFailureException
 

V

ValidationPluginInfo - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Value object with name and optional description of a validation plugin.
ValidationPluginInfo(String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
 
valueOf(String) - Static method in enum ch.systemsx.cisd.common.exceptions.StatusFlag
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOption
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetKind
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleFetchOption
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchableEntityKind
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.CompareMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseFieldType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseTimeAttribute
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.SearchOperator
Returns the enum constant of this type with the specified name.
values() - Static method in enum ch.systemsx.cisd.common.exceptions.StatusFlag
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOption
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetKind
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleFetchOption
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchableEntityKind
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.CompareMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseFieldType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseTimeAttribute
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.SearchOperator
Returns an array containing the constants of this enum type, in the order they are declared.
Vocabulary - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing an openBIS vocabulary.
Vocabulary(Vocabulary.VocabularyInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Creates a new instance with the provided initializer
Vocabulary.VocabularyInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
Vocabulary.VocabularyInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
VocabularyTerm - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
VocabularyTerm(String, String, Long, Boolean, EntityRegistrationDetails) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 

W

WebAppSettings - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A map containing persistent settings for an openBIS web app.
WebAppSettings(String, Map<String, String>) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.WebAppSettings
 
WebAppSettings(String, WebAppSettings) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.WebAppSettings
 
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