public class BlastUtils
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
static java.lang.String |
BLAST_DATABASES_FOLDER_PROPERTY |
static java.lang.String |
BLAST_TOOLS_DIRECTORY_PROPERTY |
static java.lang.String |
DEFAULT_BLAST_DATABASES_FOLDER |
Constructor and Description |
---|
BlastUtils() |
Modifier and Type | Method and Description |
---|---|
static java.io.File |
getBlastDatabaseFolder(java.util.Properties properties,
java.io.File storeRoot) |
static java.lang.String |
getBLASTToolDirectory(java.util.Properties properties) |
static java.io.File |
getFile(java.util.Properties properties,
java.lang.String pathProperty,
java.lang.String defaultPath,
java.io.File storeRoot) |
static void |
logMissingTools(org.apache.log4j.Logger operationLog) |
public static final java.lang.String BLAST_TOOLS_DIRECTORY_PROPERTY
public static final java.lang.String BLAST_DATABASES_FOLDER_PROPERTY
public static final java.lang.String DEFAULT_BLAST_DATABASES_FOLDER
public static java.io.File getBlastDatabaseFolder(java.util.Properties properties, java.io.File storeRoot)
public static java.lang.String getBLASTToolDirectory(java.util.Properties properties)
public static java.io.File getFile(java.util.Properties properties, java.lang.String pathProperty, java.lang.String defaultPath, java.io.File storeRoot)
public static void logMissingTools(org.apache.log4j.Logger operationLog)