- CACHE_WORKSPACE_FOLDER_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- CACHE_WORKSPACE_MAX_SIZE_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- CACHE_WORKSPACE_MIN_KEEPING_TIME_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- calculateFreeSpace() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Calculates the actual free space (in bytes) of the hard disk on which this share resides.
- calculateTotalSize(List<DatasetDescription>) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils
-
- callWithRetry() - Method in class ch.systemsx.cisd.common.api.retry.RetryCaller
-
- ch.systemsx.cisd.common.api - package ch.systemsx.cisd.common.api
-
- ch.systemsx.cisd.common.api.retry - package ch.systemsx.cisd.common.api.retry
-
- ch.systemsx.cisd.common.api.retry.config - package ch.systemsx.cisd.common.api.retry.config
-
- ch.systemsx.cisd.common.exceptions - package ch.systemsx.cisd.common.exceptions
-
- ch.systemsx.cisd.openbis.dss.client.api.v1 - package ch.systemsx.cisd.openbis.dss.client.api.v1
-
- ch.systemsx.cisd.openbis.dss.client.api.v1.impl - package ch.systemsx.cisd.openbis.dss.client.api.v1.impl
-
- ch.systemsx.cisd.openbis.dss.generic.shared.api.v1 - package ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
-
- ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation - package ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
- ch.systemsx.cisd.openbis.dss.generic.shared.content - package ch.systemsx.cisd.openbis.dss.generic.shared.content
-
- ch.systemsx.cisd.openbis.dss.generic.shared.dto - package ch.systemsx.cisd.openbis.dss.generic.shared.dto
-
- ch.systemsx.cisd.openbis.dss.generic.shared.utils - package ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1 - package ch.systemsx.cisd.openbis.generic.shared.api.v1
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.filter - package ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.util - package ch.systemsx.cisd.openbis.generic.shared.api.v1.util
-
- ch.systemsx.cisd.openbis.plugin.query.client.api.v1 - package ch.systemsx.cisd.openbis.plugin.query.client.api.v1
-
API Facade
- ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto - package ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
-
Data Transfer Objects
- check(List<? extends IDatasetLocation>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetAndPathInfoDBConsistencyChecker
-
- checkSession() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Checks whether the session is alive.
- checkSession() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- checkSession() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- checkSession() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Checks whether the session is alive.
- cleanUp(SimpleDataSetInformationDTO, File, String, IShareIdManager, ISimpleLogger) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils
-
Deletes specified data set in the old share if it is already in the new one or in the new one if it is still in the old one.
- close() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContent
-
- close() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- CodeAndLabelUtil - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Utility class to operate on codes and labels.
- CodeAndLabelUtil() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CodeAndLabelUtil
-
- compareTo(Attachment) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
- compareTo(SearchDomainSearchResult) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomainSearchResult
-
- COMPOUND - Static variable in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
-
Material identifier for a compound.
- ConfigurationFailureException - Exception in ch.systemsx.cisd.common.exceptions
-
The ConfigurationFailureException
is the super class of all exceptions that have
their cause in an inappropriate configuration of the system.
- ConfigurationFailureException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
-
- ConfigurationFailureException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
-
- ContentCache - Class in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
Cache for files remotely retrieved from Data Store Servers.
- ControlledVocabularyPropertyType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- ControlledVocabularyPropertyType(ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
-
- ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
-
- ControlledVocabularyPropertyType.VocabularyTerm - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- ControlledVocabularyPropertyType.VocabularyTerm(String, String, Long, Boolean, EntityRegistrationDetails) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.VocabularyTerm
-
- convertForDisplayIfNecessary(BufferedImage) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
If the specified image uses grayscale with color depth larger then 8 bits, conversion to 8
bits grayscale is done.
- convertForDisplayIfNecessary(BufferedImage, float) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
If the specified image uses grayscale with color depth larger then 8 bits, conversion to 8
bits grayscale is done.
- convertPatternListToString(List<String>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetTypeFilter
-
Takes a List of patterns and serializes them to a single string that this class can later
reread.
- copyToDirectoryAs(File, File, String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.AbstractDatasetDropboxHandler
-
- create(T) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- create(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- create() - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.PathInfoDBAwareHierarchicalContentFactory
-
Returns implementation of IHierarchicalContentFactory
based on configuration of Path
Info DB.
- create() - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.PathInfoDBOnlyHierarchicalContentFactory
-
- create(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CodeAndLabelUtil
-
Creates an instance from specified label with optional code prefix in form of
<code>
.
- create(String, String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.query.client.api.v1.FacadeFactory
-
Creates a facade for specified server URL, user Id, and password.
- create(String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.query.client.api.v1.FacadeFactory
-
Creates a facade for specified url and sessionToken.
- createAnyFieldMatch(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
Factory method to create a MatchClause matching against any property or attribute.
- createAnyPropertyMatch(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
Factory method to create a MatchClause matching against any property.
- createAttributeMatch(SearchCriteria.MatchClauseAttribute, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
Factory method to create a MatchClause matching against a specific attribute.
- createDataSetChildCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createDataSetContainerCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createDataSetParentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createDataSetTypeValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- createError(boolean) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
Create an error.
- createError(boolean, String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createError() - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createError(String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createError(String, Object...) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createError(boolean) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
Create an error.
- createError(boolean, String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- createError() - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- createError(String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- createExperimentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createFileValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- createHelper(BufferedImage) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PngWritingHelper
-
- createMasqueradingExceptionIfNeeded(Exception, Collection<String>) - Static method in class ch.systemsx.cisd.common.exceptions.ExceptionUtils
-
Analyzes given exception and makes it independent to packages outside the
specified collection or java.lang, ch.systemsx.cisd.common
.
- createMetaproject(String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Creates a new metaproject.
- createOwnerValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- createPropertyMatch(String, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
Factory method to create a MatchClause matching against a specific property.
- createPropertyValidationError(String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- createProxy(T) - Static method in class ch.systemsx.cisd.common.api.retry.RetryProxyFactory
-
- createReport() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetAndPathInfoDBConsistencyChecker
-
- createReportFromAggregationService(String, String, Map<String, Object>) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Create the report from the specified aggregation service.
- createReportFromAggregationService(AggregationServiceDescription, Map<String, Object>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Executes the specified aggregation or ingestion service for the specified parameters and
creates a report.
- createReportFromDataSets(String, String, List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Creates for the specified data sets a report.
- createReportFromDataSets(ReportDescription, List<String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Creates for the specified data sets and specified report description a report.
- createReportFromDataSets(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Creates for the specified data sets and specified report key a report.
- createRetriableError() - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createRetriableError(String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createRetriableError(String, Object...) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createRetriableError() - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- createRetriableError(String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- createSampleChildCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createSampleContainerCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createSampleCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createSampleParentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createThumbnailForDisplay(BufferedImage, int, int) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Re-scales the image to be the biggest one which fits into a (0,0,maxWidth, maxHeight)
rectangle.
- createTimeAttributeMatch(SearchCriteria.MatchClauseTimeAttribute, SearchCriteria.CompareMode, String, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
Factory method to create a MatchClause matching against registration or modification
date.
- createValidatorFromScriptPaths(String[]) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
Factory method for creating a ValidationScriptRunner given a path to a script.
- createValidatorFromScriptPaths(String[], boolean) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
Factory method for creating a ValidationScriptRunner given a path to a script.
- createValidatorFromScriptString(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
Factory method for creating a ValidationScriptRunner given the script as a string.
- createValidatorFromScriptString(String, boolean) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
Factory method for creating a ValidationScriptRunner given the script as a string.
- CsvFileReaderHelper - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
- CsvFileReaderHelper() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper
-
- CsvFileReaderHelper.DefaultCsvFileReaderConfiguration - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Default configuration for reading csv file:
';' - column delimiter
'#' - comment delimiter
ignoring empty records
- CsvFileReaderHelper.DefaultCsvFileReaderConfiguration() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- CsvFileReaderHelper.DefaultTsvFileReaderConfiguration - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Default configuration for reading TSV file:
- CsvFileReaderHelper.DefaultTsvFileReaderConfiguration() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultTsvFileReaderConfiguration
-
- CsvFileReaderHelper.ICsvFileReaderConfiguration - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Configuration for reading csv file.
- DATA_SET_SIZE_COMPARATOR - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- DATA_SOURCE_NAME - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PathInfoDataSourceProvider
-
- DATA_STREAM_MAX_TIMEOUT - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- DATA_STREAM_TIMEOUT - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- DataSet - Class in ch.systemsx.cisd.openbis.dss.client.api.v1
-
A class that provides uniform access to data set metadata (from the openBIS AS) and data (from
the openBIS DSS).
- DataSet(IOpenbisServiceFacade, IDssComponent, DataSet, IDataSetDss) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
Constructor.
- DataSet - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Immutable value object representing a data set.
- DataSet(DataSet.DataSetInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Creates a new instance with the provided initializer
- DataSet.Connections - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- DataSet.DataSetInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Class used to initialize a new data set instance.
- DataSet.DataSetInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- DATASET_CODE_SEPARATOR_PROPERTY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.AbstractDatasetDropboxHandler
-
Property name which is used to specify the text which will be used to separate the sample
code and dataset code in the name of the file which will be created in the dropbox.
- DataSetAndPathInfoDBConsistencyChecker - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
- DataSetAndPathInfoDBConsistencyChecker(IHierarchicalContentProvider, IHierarchicalContentProvider) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetAndPathInfoDBConsistencyChecker
-
- DataSetCodeId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
-
Identifies a data set by code.
- DataSetCodeId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetCodeId
-
- DataSetCodesWithStatus - Class in ch.systemsx.cisd.openbis.dss.generic.shared.dto
-
- DataSetCodesWithStatus(List<String>, DataSetArchivingStatus, boolean) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetCodesWithStatus
-
- DataSetDss - Class in ch.systemsx.cisd.openbis.dss.client.api.v1.impl
-
- DataSetDss(String, IDssServiceRpcGeneric, AuthenticatedState) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- DataSetExistenceChecker - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Helper class checking existence of a data set in a share.
- DataSetExistenceChecker(IDataSetDirectoryProvider, Properties) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetExistenceChecker
-
- DataSetExistenceChecker(IDataSetDirectoryProvider, TimingParameters) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetExistenceChecker
-
- DataSetExistenceChecker(IDataSetDirectoryProvider, long, int) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetExistenceChecker
-
- dataSetExists(DeletedDataSet) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetExistenceChecker
-
- dataSetExists(IDatasetLocation) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetExistenceChecker
-
- DataSetFetchOption - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- DataSetFetchOptions - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- DataSetFetchOptions() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOptions
-
- DataSetFetchOptions(DataSetFetchOption...) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOptions
-
- DataSetFileBlastSearchResultLocation - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- DataSetFileBlastSearchResultLocation() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFileBlastSearchResultLocation
-
- DataSetFileDTO - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
-
Represents a reference to a file/folder within a data set.
- DataSetFileDTO(String, String, boolean) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
-
- DatasetFileLines - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Stores the lines of a file with tabular data (TSV, CSV, XLS).
- DatasetFileLines(File, DatasetDescription, List<String[]>) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines
-
- DatasetFileLines(File, String, List<String[]>) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines
-
- DatasetFileLines(File, String, List<String[]>, boolean) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines
-
- DataSetFileSearchResultLocation - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Result location for a search in a sequence in a file in data set.
- DataSetFileSearchResultLocation() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFileSearchResultLocation
-
- DataSetInformation - Class in ch.systemsx.cisd.openbis.dss.generic.shared.dto
-
Container class for data extracted from the data set directory.
- DataSetInformation() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
This constructor is for serialization.
- DataSetKind - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Enumeration of all possible data set kinds.
- DatasetLocationUtil - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
- DatasetLocationUtil() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetLocationUtil
-
- DataSetPathInfo - Class in ch.systemsx.cisd.openbis.dss.generic.shared.dto
-
- DataSetPathInfo() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- DataSetRegistrationInformation<T extends DataSetInformation> - Class in ch.systemsx.cisd.openbis.dss.generic.shared.dto
-
- DataSetRegistrationInformation(T, NewExternalData) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetRegistrationInformation
-
- DataSetTechIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
-
Identifies a data set by tech id.
- DataSetTechIdId(Long) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetTechIdId
-
- DataSetType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Immutable value object representing a data set type.
- DataSetType(DataSetType.DataSetTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
-
Creates a new instance with the provided initializer
- DataSetType.DataSetTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- DataSetType.DataSetTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- DataSetTypeFilter - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A class that filters out data set types based on a whitelist or blacklist.
- DataSetTypeFilter(String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetTypeFilter
-
Constructor
- DataStore - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- DataStore(String, String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
-
- DataStoreApiUrlUtilities - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
-
- DataStoreURLForDataSets - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
The data store URL for a set of data sets.
- DataStoreURLForDataSets(String, String[]) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStoreURLForDataSets
-
- DEFAULT_BLAST_DATABASES_FOLDER - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.BlastUtils
-
- DEFAULT_DATA_SET_FOLDER_NAME - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
- DEFAULT_IMAGE_OPTIMAL_RESCALING_FACTOR - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
When a grayscale image with color depth > 8 bits has to be displayed and user has not decided
how it should be converted, then this threshold will be used.
- DefaultRetryConfiguration - Class in ch.systemsx.cisd.common.api.retry.config
-
- DelayedPersistenceManager - Class in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
- DelayedPersistenceManager(IPersistenceManager) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.content.DelayedPersistenceManager
-
- DelayedPersistenceManager(IPersistenceManager, long) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.content.DelayedPersistenceManager
-
- deleteDataSet(IDatasetLocation, IDataSetDirectoryProvider, IShareIdManager, ISimpleLogger) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils
-
Deletes specified data set.
- deleteDataSetInstantly(String, File, ISimpleLogger) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils
-
Deletes specified data set at specified location.
- deleteDataSets(String, List<String>, String, DeletionType) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Deletes or trashes the specified data sets depending on the chosen deletion type.
- deleteDataSetsForced(String, List<String>, String, DeletionType) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Deletes or trashes the specified data sets depending on the chosen deletion type.
- DeletedEntity - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- DeletedEntity() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- deleteExperiments(String, List<Long>, String, DeletionType) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Deletes or trashes the specified experiments depending on the chosen deletion type.
- deleteMetaproject(String, IMetaprojectId) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Deletes an existing metaproject.
- deletePermanently(String, List<Long>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Permanently deletes entities moved to trash in specified deletions.
- deletePermanentlyForced(String, List<Long>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Permanently deletes entities moved to trash in specified deletions.
- deleteProjects(String, List<Long>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Deletes the specified projects.
- deleteSamples(String, List<Long>, String, DeletionType) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Deletes or trashes the specified samples depending on the chosen deletion type.
- deleteSessionWorkspaceFile(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Delete a file or directory in the session workspace.
- deleteSessionWorkspaceFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- deleteSessionWorkspaceFile(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Delete a file or directory in the session workspace.
- Deletion - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- Deletion() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- DeletionFetchOption - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- DeletionType - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Types of deletion operations.
- describe() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- didFinish() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader.FileInfoDssDownloaderListener
-
- DOWNLOAD_URL_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- downloadFiles() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader
-
- DSS_CODE_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- DSS_RECOVERY_STATE_DIR_PATH - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
Directory for recovery state files.
- DSS_REGISTRATION_LOG_DIR_PATH - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
Directory for registration log files.
- DSS_SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
- DssComponent - Class in ch.systemsx.cisd.openbis.dss.client.api.v1.impl
-
Implementation of the IDssComponent interface.
- DssComponent(IGeneralInformationService, IRpcServiceFactory, String) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
Constructor for clients that already have an IETLLIMSService; also used for testing.
- DssComponentFactory - Class in ch.systemsx.cisd.openbis.dss.client.api.v1
-
A class that creates DssComponents.
- DssComponentFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory
-
- DssCrossOriginFilter - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
A DSS implementation of AbstractCrossOriginFilter
.
- DssCrossOriginFilter() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssCrossOriginFilter
-
- DssPluginType - Enum in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
- DssPropertyParametersUtil - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Utility class to load properties.
- DssPropertyParametersUtil() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- DssServiceRpcFactory - Class in ch.systemsx.cisd.openbis.dss.client.api.v1.impl
-
Client-side factory for DssServiceRpc objects.
- DssServiceRpcFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
-
- DssServiceRpcFactory(long) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
-
- DssServiceRpcGenericFactory - Class in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
- DssServiceRpcGenericFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.content.DssServiceRpcGenericFactory
-
- GENE - Static variable in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
-
Material identifier for a gene.
- generateCode(String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Generate Code.
- getAccessTimestamp() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getAccessTimestamp() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getAlignmentMatch() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFileBlastSearchResultLocation
-
- getAlignmentMatch() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityPropertyBlastSearchResultLocation
-
- getAttachmentHolderId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getAttachmentHolderId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the id of the entity holding this attachment.
- getAttribute() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.AttributeMatchClause
-
Return the code of the attribute to compare against.
- getAttribute() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
-
Return the code of the attribute to compare against.
- getAugmentedCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
-
- getBitScore() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.BlastScore
-
- getBlastDatabaseFolder(Properties, File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.BlastUtils
-
- getBLASTToolDirectory(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.BlastUtils
-
- getChecksumCRC32() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getChecksumCRC32() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getChildNodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getChildren() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
Deprecated.
- getChildren() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Return the children.
- getChildren() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getChildrenCodes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getChildrenCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getChildrenCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Return the children codes.
- getChildrenJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getClassName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
-
- getCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getCode() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
The code of this data set.
- getCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Returns the data set code;
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
-
Returns the unique entity type code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
Returns the experiment code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetCodeId
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.MaterialCodeAndTypeCodeId
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Return the term's code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
Returns the project code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
Return the code of this property type.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
-
Returns role code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
-
Returns the space code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns the vocabulary code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-
- getCodePrefix() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns code prefix used to create sample code automatically.
- getCodePrefix() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- getCols() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PngWritingHelper
-
- getColumnDelimiter() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- getColumnDelimiter() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultTsvFileReaderConfiguration
-
- getColumnDelimiter() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration
-
- getColumns() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableModel
-
Returns columns as specified in the constructor.
- getCommentDelimiter() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- getCommentDelimiter() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration
-
- getCompareMode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
- getContainedDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getContainedDataSets() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getContainedDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getContainedDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getContainerOrNull() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getContainerOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getContainerOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getCriteria() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- getCsvReader(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper
-
Get a CsvReader for parsing a tabular data file with default configuration.
- getCsvReader(File, CsvFileReaderHelper.ICsvFileReaderConfiguration) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper
-
Get a CsvReader for parsing a tabular data file with specified configuration.
- getDataLines() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines
-
- getDataLines() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.ITabularData
-
- getDataSet(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Get a proxy to the data set designated by the given data set code.
- getDataSet(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- getDataSet(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getDataSet(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return a
DataSet
object for for the given code.
- getDataSetCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
-
The code of the data set that owns this file
- getDataSetCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetCodesWithStatus
-
- getDataSetCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStoreURLForDataSets
-
A set of data sets that can be found in this data store.
- getDataSetDss() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
Internal accessor, made public for testing, but clients should not need it.
- getDataSetDss(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getDatasetFileLines(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper
-
Return the tabular data as a DatasetFileLines with default configuration.
- getDatasetFileLines(File, CsvFileReaderHelper.ICsvFileReaderConfiguration) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper
-
Return the tabular data as a DatasetFileLines with specified configuration.
- getDataSetFolderName() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
The name of the folder containing the files in the data set.
- getDataSetInformation() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetRegistrationInformation
-
- getDataSetKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- getDataSetKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
-
Returns the kind of data sets of this type.
- getDatasetLocationPath(File, String, String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetLocationUtil
-
Creates a location where a dataset can be found in a specified base directory.
- getDatasetLocationPath(String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetLocationUtil
-
returns location (path relative to the share)
- getDatasetLocationPathCheckingIfExists(String, String, DatabaseInstance, File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetLocationUtil
-
Creates a location where a dataset can be found in a specified base directory.
- getDataSetMetadata() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
The metadata data for the data set, including type and properties.
- getDataSetMetaData(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns meta data for all specified data sets.
- getDataSetMetaData(String, List<String>, EnumSet<DataSetFetchOption>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns meta data for all specified data sets.
- getDataSetOwner() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
The direct owner of the data set, either an experiment or a sample.
- getDataSetOwner() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
The owner may be null during construction but is non-null in a well-formed object.
- getDataSetOwnerIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
The owner identifier may be and empty during construction but is non-null in a well-formed
object.
- getDataSetOwnerType() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
The owner type should never be null.
- getDataSetProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getDataSetRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getDataSets(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getDataSets(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return
DataSet
objects for given a set of codes.
- getDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- getDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
-
- getDataSetsOrderedBySize() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns all data sets of this shared ordered by size starting with the largest data set.
- getDataSetType() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getDataSetTypeCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getDataSetTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getDataSetTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getDataSetTypes() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- getDataSetUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getDataSource() - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PathInfoDataSourceProvider
-
- getDataStoreBaseUrl() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
Returns the base URL of the data store that provides this service.
- getDataStoreBaseURLs(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns the download URL for the data store of specified data sets.
- getDataStoreCode(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDataStoreCode() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
The code of the data store that provides this service.
- getDataStoreCode() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- getDataStoreURL() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStoreURLForDataSets
-
The base URL of the data store.
- getDataStoreUrlFromDownloadUrl(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataStoreApiUrlUtilities
-
Converts the download url to a server url.
- getDataStreamMaxTimeout(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDataStreamTimeout(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDataType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
- getDataType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- getDataType() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumn
-
Returns the data type.
- getDefaultPutDataStoreBaseURL(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns the URL for the default data store server for this openBIS AS.
- getDeletedEntities() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the description given by the user when uploading this attachment.
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
-
Returns the description or null
if undefined.
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Return the term's description.
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
Returns the project description.
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
Return the extended description.
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
-
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns the vocabulary description.
- getDescription() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
Returns an optional description or empty string if undefined.
- getDesiredValue() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
- getDownloadLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getDownloadLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the download link.
- getDownloadUrl(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDownloadUrl() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
-
- getDownloadUrlForFileForDataSet(String, DataSetFileDTO) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns an URL from which the requested file.
- getDownloadUrlForFileForDataSet(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns an URL from which the requested file of the specified data set can be downloaded.
- getDownloadUrlForFileForDataSetWithTimeout(String, DataSetFileDTO, long) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns an URL from which the requested file.
- getDownloadUrlForFileForDataSetWithTimeout(String, String, String, long) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns an URL from which the requested file of the specified data set can be downloaded.
- getDownloadUrlFromDataStoreUrl(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataStoreApiUrlUtilities
-
Converts a data store server URL to a URL that can be used to download files.
- getDssInternalTempDir(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDssRecoveryStateDir(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDssRegistrationLogDir(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getEndOfChain(Throwable) - Static method in class ch.systemsx.cisd.common.exceptions.ExceptionUtils
-
Returns the last Throwable
of a chain of throwables.
- getEntityKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
-
- getEntityKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- getEntityType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
-
- getEntityType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- getErrorMessage() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- getEvalue() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.BlastScore
-
- getExcelWorkbook(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ExcelFileReader
-
- getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
Returns the identifier of experiment which makes it unique.
- getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Returns the identifier of the Experiment to which this data set belongs.
- getExperimentIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getExperimentIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getExperimentIdentifiers() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns the set of experiment identifier or an empty set if undefined.
- getExperimentRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getExperiments(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getExperiments(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return
Experiment
objects for a set of given experiment identifiers.
- getExperiments() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- getExperiments() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
-
- getExperimentTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getExperimentTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
Returns the experiment type code.
- getExperimentUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getExternalCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getExternalData() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetRegistrationInformation
-
- getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getExternalDataSetCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getExternalDataSetCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getExternalDataSetCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getExternalDataSetLink() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getExternalDataSetLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getExternalDataSetLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getExtractableData() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getFieldType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
The field type this MatchClause matches against.
- getFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getFile(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
Get an InputStream
with contents of a file contained in this data set.
- getFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getFile() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
The file that contains the data set.
- getFile(String, IDatasetLocation, DataSetPathInfo) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- getFile(String, IDatasetLocation, DataSetPathInfo) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.content.IContentCache
-
- getFile() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getFile(Properties, String, String, File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.BlastUtils
-
- getFile() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines
-
- getFileContent() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getFileForDataSet(String, DataSetFileDTO) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
- getFileForDataSet(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
- getFileFromSessionWorkspace(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Downloads a file from the session workspace.
- getFileFromSessionWorkspace(String, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Downloads a file from the session workspace.
- getFileFromSessionWorkspace(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- getFileFromSessionWorkspace(String, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- getFileFromSessionWorkspace(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Download a file from the user's session workspace.
- getFileInfos(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssBuilder
-
Return a list of
FileInfoDssDTO
objects corresponding to all files existing within a
certain folder.
- getFileInfos() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
- getFileInfos() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
- getFileLength() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getFileName() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getFileName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getFileName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the file name of this attachment.
- getFileSize() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
-
Return the file size if this FileInfo represents a file.
- getFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getFlag() - Method in class ch.systemsx.cisd.common.exceptions.Status
-
- getFreeSpace() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- getGeneralInformationService() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
- getHeaderCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines
-
Returns the normalized headers.
- getHeaderCodes() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.ITabularData
-
- getHeaderLabels() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines
-
Returns the headers as defined in the file.
- getHeaderLabels() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.ITabularData
-
- getHeight() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.Size
-
- getHostUrl() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
-
- getId() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Returns tech id of the data set.
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
Returns the experiment id.
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
Returns the techical database id of the project.
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample id.
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns the vocabulary id.
- getId() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
Returns the ID of the query.
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwner
-
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFileSearchResultLocation
-
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
Returns the experiment identifier.
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectIdentifierId
-
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample identifier;
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getImageInfo() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PngWritingHelper
-
- getInputStream(String, IDatasetLocation, DataSetPathInfo) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- getInputStream(String, IDatasetLocation, DataSetPathInfo) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.content.IContentCache
-
- getInputStream() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getInstance() - Static method in class ch.systemsx.cisd.common.api.retry.config.DefaultRetryConfiguration
-
- getInstanceCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getInstanceUUID() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getInterfaceName() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
-
The name of this interface used for identification.
- getInterfaceName() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
-
The name of this interface used for identification.
- getIsCompleteFlag() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getKey() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- getKeyOfKeyListPropertyOrNull() - Method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
- getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Return the term's label.
- getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
Return the label shown in forms.
- getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomain
-
- getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-
- getLabel() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
Returns the label of the service.
- getLabel() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- getLastModified() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getLastModified() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getLinkOrCopyOfContent(String, File, String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getLinkOrCopyOfContent(String, File, String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
Returns a File
, if possible, that directly references some specified content of a
data set in the data store server.
- getLinkOrCopyOfContent(String, File, String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getLinkOrCopyOfContents(String, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getLinkOrCopyOfContents(String, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
Returns a File
, if possible, that directly references the contents of a data set in
the data store server.
- getLinkOrCopyOfContents(String, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getMainDataSetPath() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- getMainDataSetPath() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
-
Returns main data set path if defined.
- getMainDataSetPattern() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- getMainDataSetPattern() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
-
Returns main data set pattern if defined.
- getMajorVersion() - Method in interface ch.systemsx.cisd.common.api.IRpcService
-
Returns the major version of the server side interface.
- getMajorVersion() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
-
The major version of the interface.
- getMatchClauses() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
-
Get a list of MatchClause objects this SearchCriteria will match against.
- getMaterialByCodes(String, List<MaterialIdentifier>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns the materials with specified identifiers (i.e.
- getMaterialCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getMaterialCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
-
- getMaterialProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
-
- getMaterialProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getMaterialRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getMaterials() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- getMaterials() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
-
- getMaterialTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
-
Returns the code of this material type.
- getMaterialTypeIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getMaterialTypeIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
-
- getMaterialUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getMaximumNumberOfRetries() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
-
- getMaximumNumberOfRetries() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- getMessage() - Method in exception ch.systemsx.cisd.common.exceptions.NotImplementedException
-
Returns the error message for this exception.
- getMetaproject() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- getMetaproject(String, IMetaprojectId) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all entities tagged with given metaproject.
- getMetaprojectOnBehalfOfUser(String, IMetaprojectId, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all entities tagged with given metaproject for specified user.
- getMetaprojectRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getMetaprojectsJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getMetaprojectUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getMethodName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
-
- getMinorVersion() - Method in interface ch.systemsx.cisd.common.api.IRpcService
-
Returns the minor version of this server side interface.
- getMinorVersion() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
-
The major version of the interface.
- getMinorVersionInformationService() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getMinorVersionInformationService() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns the minor version of the general information service.
- getModificationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getModificationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getModifierEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getModifierEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getModifierFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getModifierFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getModifierLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getModifierLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getModifierUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getModifierUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getName() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
-
Returns the name of this group (section).
- getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
-
- getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomain
-
- getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
-
- getName() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
Returns the name of the query.
- getNode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContent
-
- getNumberOfMismatches() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- getOpenBisServerUrl(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getOperator() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
-
Gets the operator for combining MatchClause objects.
- getOrdinal() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-
- getParameters() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
Returns the list of parameters to which values should be bound when executing the query.
- getParent() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getParent() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
Deprecated.
- getParentCodes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getParentCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getParentCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Return the parent codes.
- getParentDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
The codes of the parent data sets for this new data set.
- getParentDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
The codes of the parent data sets for this new data set.
- getParentDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getParentRelativePath() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Return the parents.
- getParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getParentsJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getPath() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
-
The path within the data set of the file
- getPathInDataSet() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
-
The path of this file in the data set (i.e., the root of the data set has a path of "").
- getPathInDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFileSearchResultLocation
-
- getPathInListing() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
-
The path of this file relative to the path of the request that produced this FileInfoDss
- getPathToDataSet(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Get a path to the data set.
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
-
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
Returns the experiment permanent id.
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectPermIdId
-
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
Returns the permanent id of the project.
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample permanent id.
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getPluginKey(String, String, Properties) - Method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
- getPosition() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
-
- getPrefix() - Method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
- getPreviousTermOrdinal() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Return the position of predecessor term in the vocabulary.
- getPrimaryDataSetOrNull() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
Returns the primary data set.
- getProducerCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getProductionDate() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getProjectRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getProjects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
-
Returns all projects of this space.
- getProjectUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
The properties for the new data set.
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getPropertiesJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getPropertyCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.PropertyMatchClause
-
Return the code of the property to compare against.
- getPropertyCodeOrNull() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- getPropertyType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityPropertySearchResultLocation
-
- getPropertyTypeGroups() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
-
Return the grouped property types for this entity type.
- getPropertyTypeGroups() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- getPropertyTypes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
-
- getPropertyTypes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
-
- getQueryEnd() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- getQueryStart() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- getReasonOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Return the registration details.
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Return the data set registration details.
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
Return the vocabulary term registration details.
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Return the sample registration details.
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-
Return the vocabulary term registration details.
- getRegistrationId() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getRelativePath() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getRelativePath() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getResultLocation() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomainSearchResult
-
- getRetrievedConnections() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getRetrievedConnections() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getRetrievedConnections() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getRetrievedFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns fetch options used to retrieved this sample object.
- getRetrievedFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getRoles(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
-
Returns all access roles the specified user has on this space.
- getRootExceptionClassName() - Method in exception ch.systemsx.cisd.common.exceptions.MasqueradingException
-
- getRootNode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContent
-
- getRows() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PngWritingHelper
-
- getRows() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableModel
-
Gets all rows.
- getSampleCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getSampleIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
Returns the sample identifier.
- getSampleIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getSampleIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getSampleIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getSampleProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
Returns the sample properties.
- getSampleRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getSamples(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getSamples(List<String>, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getSamples(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return
Sample
objects for a set of given sample identifiers.
- getSamples(List<String>, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return
Sample
objects for a set of given sample identifiers.
- getSamples() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- getSamples() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
-
- getSampleTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample type code.
- getSampleTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getSampleTypeId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample type id.
- getSampleTypeId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getSampleUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getScore() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.BlastScore
-
- getScore() - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ISearchDomainResultScore
-
Returns the score of the result.
- getScore() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomainSearchResult
-
- getScriptString() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
- getSearchDomain() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomainSearchResult
-
- getSequenceEnd() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- getSequenceStart() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- getService(RpcServiceInterfaceVersionDTO, Class<T>, String, boolean) - Method in interface ch.systemsx.cisd.common.api.IRpcServiceFactory
-
Get a proxy to the RPC service interface specified by ifaceVersion
.
- getService() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getService(RpcServiceInterfaceVersionDTO, Class<T>, String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
-
- getService(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.DssServiceRpcGenericFactory
-
- getService(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.content.IDssServiceRpcGenericFactory
-
Returns the service for the specified base URL.
- getServiceKey() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
The key that identifies this particular service.
- getServletClass() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.PluginServletConfig
-
- getServletPath() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.PluginServletConfig
-
URL path at which the servlet will be deployed
- getServletProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.PluginServletConfig
-
Any additional properties specified in the properties file
- getSessionToken() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Returns the session token.
- getSessionToken() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- getSessionToken() - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IWebInformationService
-
Returns the server side session token for the current HTTP session.
- getSessionToken() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Return the session token for the logged-in user.
- getSessionURLForFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getSessionURLForFile(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
Get a URL that will return the contents of a file contained in this data set.
- getSessionURLForFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getSessionWorkspace(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SessionWorkspaceUtil
-
- getSettings() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.WebAppSettings
-
- getShare() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns the root directory of this share.
- getShareId() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- getShareId() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getShareId() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns the share Id of this share.
- getShares(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils
-
Lists all folders in specified store root directory which match share pattern.
- getSharesWithDataSets(File, String, SegmentedStoreUtils.FilterOptions, Set<String>, IFreeSpaceProvider, IEncapsulatedOpenBISService, ISimpleLogger) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils
-
Gets a list of all shares of specified store root directory.
- getShufflePriority() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- getSimpleClassName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
-
- getSizeInBytes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getSpaceCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
Returns the space code.
- getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the space code.
- getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getSpaceRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getSpaceRoleAssignments() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getSpaceRoleRevocations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getSpacesWithProjects() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getSpacesWithProjects() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all spaces enriched with their projects and role assignments.
- getSpeed() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns the speed of this share.
- getSpeedHint() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getStatus() - Method in exception ch.systemsx.cisd.common.exceptions.ExceptionWithStatus
-
- getStatus() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetCodesWithStatus
-
- getStatus() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetAndPathInfoDBConsistencyChecker
-
- getStoreRootDir(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getSubCriterias() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
-
- getSubFolderName() - Method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
- getSupportedInterfaces(String, boolean) - Method in interface ch.systemsx.cisd.common.api.IRpcServiceFactory
-
Get the RPC service interfaces supported by the server.
- getSupportedInterfaces() - Method in interface ch.systemsx.cisd.common.api.IRpcServiceNameServer
-
Return a collection of interfaces supported by this server
- getSupportedInterfaces(String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
-
- getTarget() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- getTargetEntityKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- getTechId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectTechIdId
-
- getTerms() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
-
- getTerms() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns the vocabulary terms.
- getTimeZone() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
-
Return the time zone to compare against.
- getTitle() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getTitle() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the title given by the user when uploading this attachment.
- getTitle() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumn
-
Returns the title.
- getTotalDatasetsCount() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- getTotalExperimentsCount() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- getTotalNumberOfGaps() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- getTotalSamplesCount() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- getTotalSizeOfDataSets() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns the total size (in bytes) of all data sets.
- getType() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwner
-
- getType() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
The type of the service.
- getType() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
-
- getTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.MaterialCodeAndTypeCodeId
-
- getUnmodifiableProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
The unmodifiable property types (as strings).
- getUploadingUserIdOrNull() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getURLForFileWithTimeout(String, long) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getURLForFileWithTimeout(String, long) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
Get a URL that will return the contents of a file contained in this data set.
- getURLForFileWithTimeout(String, long) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getUrlForRpcService(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataStoreApiUrlUtilities
-
- getUrlSuffix() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
-
The suffix added to the server's URL to produce the URL for this interface.
- getUrlTemplate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns a URL template (e.g a search query) that can display additional information for
concrete vocabulary terms.
- getUserDisplaySettings(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
- getUserEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getUserFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getUserLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getUsers() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
-
Returns the set of all users that have a role in this space.
- getValidationPluginInfo() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
-
- getValidationPluginInfo() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- getValidationScript(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Get the validation script for the specified data set type.
- getValue() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
-
- getVersion() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getVersion() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the version of this attachment.
- getVersions() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
-
- getVocabulary() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
-
- getVocabularyTermsMap() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getVocabularyTermsMap() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
- getVocabularyTermsMap(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
- getVocabularyUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getWaitingTimeBetweenRetries() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
-
- getWaitingTimeBetweenRetries() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- getWaitingTimeBetweenRetriesIncreasingFactor() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
-
- getWaitingTimeBetweenRetriesIncreasingFactor() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- getWebAppId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.WebAppSettings
-
- getWebAppSettings(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getWebAppSettings(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Returns the persistent settings for a given custom web app.
- getWebAppSettings(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Returns the persistent settings for a given custom web app.
- getWidth() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.Size
-
- GIF_FILE - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
- IContentCache - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
Interface for cache for files remotely retrieved from Data Store Servers.
- IDataSetDss - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
-
The representation of a Data Set managed by a DSS server.
- IDataSetFilter - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
-
Interface filters of
DataSet
instances.
- IDataSetId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
-
Holds information that uniquely identifies a data set in openBIS.
- IDssComponent - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
-
A component that manages a connection to openBIS and 1 or more data store servers.
- IDssServiceRpcGeneric - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
-
Generic functionality for interacting with the DSS.
- IDssServiceRpcGenericFactory - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
- IExperimentId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment
-
Holds information that uniquely identifies an experiment in openBIS.
- IGeneralInformationChangingService - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1
-
Service for changing general informations.
- IGeneralInformationService - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1
-
Service for retrieving general informations.
- IGNORED_FOR_SHUFFLING_PROP - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ShareFactory
-
- imageToPng(BufferedImage) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Converts the given image to a PNG image.
- imageToPng(BufferedImage, PngFilterType, int) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Converts the given image to a PNG image.
- imageToPngFast(BufferedImage) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Converts the given image to a PNG image.
- ImageUtil - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Utility function on images.
- ImageUtil() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
- IMaterialId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material
-
Holds information that uniquely identifies a material in openBIS.
- IMetaprojectId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject
-
Holds information that uniquely identifies a metaproject in openBIS.
- IncompatibleAPIVersionsException - Exception in ch.systemsx.cisd.common.api
-
Exception that is thrown if the client can not talk to the server because of API version
incompatibility.
- IncompatibleAPIVersionsException(int, int) - Constructor for exception ch.systemsx.cisd.common.api.IncompatibleAPIVersionsException
-
- initializeFromTemplate(NewDataSetDTOBuilder) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
Take over any appropriate values from the template.
- INSTANCE - Static variable in class ch.systemsx.cisd.openbis.dss.client.api.v1.OpenbisServiceFacadeFactory
-
- INSTANCE - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- InternalErr - Exception in ch.systemsx.cisd.common.exceptions
-
Exception representing internal error in the program caused by programmer error.
- InvalidAuthenticationException - Exception in ch.systemsx.cisd.common.exceptions
-
Exception to be thrown when authentication of a service at another service fails.
- InvalidAuthenticationException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException
-
- InvalidAuthenticationException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException
-
- InvalidExternalDataException - Exception in ch.systemsx.cisd.common.exceptions
-
Data provided to the system from another system is invalid.
- InvalidExternalDataException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
-
- InvalidExternalDataException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
-
- InvalidSessionException - Exception in ch.systemsx.cisd.common.exceptions
-
This UserFailureException
extension signals that a session has expired.
- InvalidSessionException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidSessionException
-
- invoke(MethodInvocation) - Method in class ch.systemsx.cisd.common.api.retry.RetryInterceptor
-
- IObjectId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id
-
Holds information that uniquely identifies an object in openBIS.
- IOpenbisServiceFacade - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
-
Provides a fully-blown API for openBIS integration.
- IOpenbisServiceFacadeFactory - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
-
- IPersistenceManager - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
Manages persistence of a statefull object.
- IProjectId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project
-
Holds information that uniquely identifies a project in openBIS.
- IQueryApiFacade - Interface in ch.systemsx.cisd.openbis.plugin.query.client.api.v1
-
Facade for openBIS query service.
- IRpcService - Interface in ch.systemsx.cisd.common.api
-
The most generic interface for RPC invocations into openBIS.
- IRpcServiceFactory - Interface in ch.systemsx.cisd.common.api
-
A factory for creating proxies to RPC services on a data store server.
- IRpcServiceNameServer - Interface in ch.systemsx.cisd.common.api
-
An Interface for finding out about the IRpcService interfaces supported by a server.
- ISampleId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
-
Holds information that uniquely identifies a sample in openBIS.
- isAutomaticCodeGeneration() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if the sample code is created automatically.
- isAutomaticCodeGeneration() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isChecksumCRC32Precalculated() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- isChosenFromList() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Return true
if the vocabulary was chosen from a list.
- isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- isDataSourceDefined() - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PathInfoDataSourceProvider
-
- isDeletionDisallowed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- isDeletionDisallowed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
-
Returns true
if deletion for data sets of this type are disallowed.
- isDinamic() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
- isDinamic() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- isDirectory() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
-
Return true if this FileInfo represents a folder.
- isDirectory() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- isDirectory() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- ISearchDomainResultLocation - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Marker interface specifying the location of search result on a search domain.
- ISearchDomainResultScore - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Basic interface of classes specifying a score of search domain result.
- isError() - Method in class ch.systemsx.cisd.common.exceptions.Status
-
- isExcelFile(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ExcelFileReader
-
Uses file extension to figure out if given file is supported Excel file.
- isGif(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Returns true
if the fileTypeOrNull is a gif file.
- isIgnoreComments() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- isIgnoreComments() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration
-
- isIgnoredForShuffling() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
Returns true
if the share should not be used by shuffling maintenance or
post-registration tasks.
- isIgnoredForShuffling() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- isImageFile(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Returns true
if the specified file is a supported image file.
- ISimpleOpenbisServiceFacade - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
-
Provides a simplified view of an openBIS backend by allowing the following operations :
- isIncoming() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
Returns true
if the share is associated with one or more incoming directories.
- isIncoming() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns true
if this is an incoming share.
- isInternalNamespace() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns true
if the vocabulary is in the internal openBIS namespace.
- isJpeg(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Returns true
if the fileTypeOrNull is a jpeg file.
- isLinkDataSet() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- isLinkDataSet() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- isLinkDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- isLinkDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- isLinkSample() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- isListable() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if this is a sample type of listable samples.
- isListable() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isManaged() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
- isManaged() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- isManagedInternally() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns true
if the vocabulary is managed internally.
- isMandatory() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
- isMandatory() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- isNoFileDataSet() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- isNonRetriableError() - Method in class ch.systemsx.cisd.common.exceptions.Status
-
- isOfficial() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-
- isOK() - Method in class ch.systemsx.cisd.common.exceptions.Status
-
- isPng(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Returns true
if the fileTypeOrNull is a png file.
- isPresentInArchive() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetCodesWithStatus
-
- isRecursive() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
-
If true, this object includes sub folders
- isRetriable() - Method in exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
-
Returns the assessment of the subsystem throwing the exception whether the failure could be
temporarily and thus retrying the operation (on a higher level) could possibly help to cure
the problem.
- isRetriable() - Method in exception ch.systemsx.cisd.common.exceptions.HighLevelException
-
Returns the assessment of the subsystem throwing the exception whether the failure could be
temporarily and thus retrying the operation (on a higher level) could possibly help to cure
the problem.
- isRetriable(Throwable) - Static method in exception ch.systemsx.cisd.common.exceptions.HighLevelException
-
Returns the assessment of the subsystem throwing the exception whether the failure could be
temporarily and thus retrying the operation (on a higher level) could possibly help to cure
the problem.
- isRetriableError() - Method in class ch.systemsx.cisd.common.exceptions.Status
-
- isSessionActive(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns true if session with the specified token is still active, false otherwise.
- isShowContainer() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if for samples of this type the container field is shown in
edit/registration form.
- isShowContainer() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isShowInEditViews() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
- isShowInEditViews() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- isShowParentMetaData() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if meta data of parents of samples of this type should be shown.
- isShowParentMetaData() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isShowParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if for sample of this type the parents field is shown in
edit/registration form.
- isShowParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isSkipEmptyRecords() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- isSkipEmptyRecords() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration
-
- isSpaceLevel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
-
Returns true
if this role is for a particular space.
- isStorageConfirmed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- isStorageConfirmed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- isStub() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- isStub() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
- isStub() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- isTiff(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Returns true
if the fileTypeOrNull is a tiff file.
- isUnarchivingScratchShare() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- isUniquePluginNameRequired() - Method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
- isUniqueSubcodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if the sub code of samples of this type has to be unique.
- isUniqueSubcodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isUnmodifiableProperty(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
- isWithdrawShare() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
Returns true
if the share should be emptied by shuffling maintenance tasks.
- isWithdrawShare() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- ITabularData - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
- IWebInformationService - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1
-
Service for retrieving web information.
- listAggregationServices(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns metadata for all aggregation services.
- listAggregationServices() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
List the available aggregation and ingestion services
- listAllShares(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Lists all shares.
- listAttachmentsForExperiment(String, IExperimentId, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists attachments of specified experiment.
- listAttachmentsForProject(String, IProjectId, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists attachments of specified project.
- listAttachmentsForSample(String, ISampleId, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists attachments of specified sample.
- listAvailableSearchDomains(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists available search domains.
- listDataSets(List<Sample>, EnumSet<DataSet.Connections>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSets(List<Sample>, EnumSet<DataSet.Connections>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Return all data sets attached to the given samples with connections.
- listDataSets(String, List<Sample>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets attached to the given samples.
- listDataSets(String, List<Sample>, EnumSet<DataSet.Connections>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets attached to the given samples with connections.
- listDataSetsForExperiment(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSetsForExperiment(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all data sets of specified experiment.
- listDataSetsForExperiments(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSetsForExperiments(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all data sets for a given list of experiments identifiers.
- listDataSetsForExperiments(String, List<Experiment>, EnumSet<DataSet.Connections>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets attached to the given experiments with connections.
- listDataSetsForExperimentsOnBehalfOfUser(String, List<Experiment>, EnumSet<DataSet.Connections>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets attached to the given experiments with connections that the user userId is allowed to see.
- listDataSetsForSample(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSetsForSample(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all data sets of specified sample.
- listDataSetsForSample(String, Sample, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return the data sets attached to the specified sample, optionally including child samples.
- listDataSetsForSamples(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSetsForSamples(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all data sets for a given list of sample identifiers.
- listDataSetsOnBehalfOfUser(String, List<Sample>, EnumSet<DataSet.Connections>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets attached to the given samples with connections that the user userId is allowed to see.
- listDataSetTypes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSetTypes() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all data set types available in openBIS.
- listDataSetTypes(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all data set types.
- listDataStores(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists all DSS server registered this openBIS server instance.
- listDeletions(String, EnumSet<DeletionFetchOption>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all deletions.
- listExperiments(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all experiments of the given type that belong to the supplied projects.
- listExperiments(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all experiments matching a specified set of identifiers.
- listExperimentsForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listExperimentsForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all experiments for a given list of project identifiers.
- listExperimentsHavingDataSets(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all experiments of the given type that belong to the supplied projects and have registered data sets.
- listExperimentsHavingDataSetsForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listExperimentsHavingDataSetsForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all experiments having data sets for a given list of project identifiers.
- listExperimentsHavingSamples(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all experiments of the given type that belong to the supplied projects and have registered samles.
- listExperimentsHavingSamplesForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listExperimentsHavingSamplesForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all experiments having samples for a given list of project identifiers.
- listExperimentTypes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listExperimentTypes() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all experiment types available in openBIS.
- listExperimentTypes(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all experiment types.
- listFiles(String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- listFiles(String, boolean) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
List files contained in this data set.
- listFiles(String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- listFilesForDataSet(String, DataSetFileDTO) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Get an array of FileInfoDss objects that describe the file-system structure of the data set.
- listFilesForDataSet(String, String, String, boolean) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Get an array of FileInfoDss objects that describe the file-system structure of the data set.
- listMatchingNodes(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContent
-
- listMatchingNodes(String, String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContent
-
- listMetaprojects(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists all metaprojects belonging to current user.
- listMetaprojectsOnBehalfOfUser(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists all metaprojects belonging to specified user.
- listNamedRoleSets(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all named role sets.
- listProjects() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listProjects() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all available projects.
- listProjects(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all available projects.
- listProjectsOnBehalfOfUser(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all available projects that a particular user is allowed to see.
- listPropertyTypes(String, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists property types.
- listQueries() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Lists all queries the user has access rights.
- listSamplesForExperiment(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all samples that belong to the supplied experiment.
- listSamplesForExperimentAndSampleType(String, String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesForExperimentAndSampleType(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all samples for specified experiment and of specified type.
- listSamplesForExperimentOnBehalfOfUser(String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all samples that belong to the supplied experiment that are visible to user userId.
- listSamplesForExperiments(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesForExperiments(List<String>, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesForExperiments(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all samples for a given list of experiments identifiers.
- listSamplesForExperiments(List<String>, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all samples for a given list of experiments identifiers.
- listSamplesForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesForProjects(List<String>, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all samples for a given list of project identifiers.
- listSamplesForProjects(List<String>, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all samples for a given list of project identifiers.
- listSamplesOfSample(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesOfSample(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all samples which are components or children of the specified sample.
- listSampleTypes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSampleTypes() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all sample types available in openBIS.
- listSampleTypes(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all sample types.
- listSpacesWithProjectsAndRoleAssignments(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all spaces of specified database instance enriched with their projects and role assignments.
- listTableReportDescriptions(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns meta data for all reporting plugins which deliver a table.
- listTableReportDescriptions() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Returns meta data for all reporting plugins which deliver a table.
- listVocabularies() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listVocabularies() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all vocabularies available in openBIS together with the contained vocabulary terms.
- listVocabularies(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all available vocabularies together with the contained terms.
- load(Serializable) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.DelayedPersistenceManager
-
- load(Serializable) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.content.IPersistenceManager
-
Loads and returns the persistent object.
- load(Serializable) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.SimpleFileBasePersistenceManager
-
- loadColorDepthJavaAdvancedImagingTiff(IRandomAccessFile, ImageID) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
For experts only! Loads some kinds of TIFF images handled by JAI library.
- loadDimensionJavaAdvancedImagingTiff(IRandomAccessFile, ImageID) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
For experts only! Loads some kinds of TIFF images handled by JAI library.
- loadImageForDisplay(IHierarchicalContentNode) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Loads an image from specified file node.
- loadJavaAdvancedImagingTiff(IRandomAccessFile, ImageID) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
For experts only! Loads some kinds of TIFF images handled by JAI library.
- loadProperties(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- loadServiceProperties() - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
loads server configuration
- loadUnchangedImage(IHierarchicalContentNode, String, String, String, IReadParams) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Loads the image specified by imageIdOrNull from the given inputStream.
- loadUnchangedImageColorDepth(IHierarchicalContentNode, String, String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Loads the color depth of image specified by imageIdOrNull from the given
inputStream.
- loadUnchangedImageDimension(IHierarchicalContentNode, String, String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Loads the size of image specified by imageIdOrNull from the given
inputStream.
- logMissingTools(Logger) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.BlastUtils
-
- logout() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Logs the current user out.
- logout() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- logout() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- logout() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Logs out from openBIS and frees all associated resources on the server.
- logout(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Logout the session with the specified session token.
- logout() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Logs current user out.
- Sample - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Immutable value object representing a sample.
- Sample(Sample.SampleInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Creates a new instance with the provided initializer
- Sample.SampleInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Class used to initialize a new sample instance.
- Sample.SampleInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- SampleFetchOption - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- SampleIdentifierId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
-
Identifies a sample by identifier.
- SampleIdentifierId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample.SampleIdentifierId
-
- SamplePermIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
-
Identifies a sample by perm id.
- SamplePermIdId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample.SamplePermIdId
-
- SampleTechIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
-
Identifies a sample by tech id.
- SampleTechIdId(Long) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample.SampleTechIdId
-
- SampleType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Immutable value object representing a sample type.
- SampleType(SampleType.SampleTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Creates a new instance with the provided initializer
- SampleType.SampleTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Class used to initialize a new
SampleType
instance.
- SampleType.SampleTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- SearchableEntityKind - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
An enum listing the different kinds of entities that are searchable.
- SearchCriteria - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A (mutable) object representing the specification of a search.
- SearchCriteria() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
-
- SearchCriteria.AnyFieldMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A MatchClause for checking that any of the properties or attributes equals a desired value.
- SearchCriteria.AnyPropertyMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A MatchClause for checking that any of the properties equals a desired value.
- SearchCriteria.AttributeMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A MatchClause for checking that an attribute equals a desired value.
- SearchCriteria.CompareMode - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- SearchCriteria.MatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A specification of one field (either property or attribute) and desired value for that field.
- SearchCriteria.MatchClauseAttribute - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
An enum listing the different attributes that can be compared against.
- SearchCriteria.MatchClauseFieldType - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
An enum listing the different field types that can be compared against.
- SearchCriteria.MatchClauseTimeAttribute - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
An enum listing the different attributes containing time values that can be compared against.
- SearchCriteria.PropertyMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A MatchClause for checking that a property equals a desired value.
- SearchCriteria.SearchOperator - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Operators for combining MatchClause objects.
- SearchCriteria.TimeAttributeMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A MatchClause for comparing a time attribute to a specified value.
- SearchDomain - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- SearchDomain() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomain
-
- SearchDomainSearchResult - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Result of a search on a search domain.
- SearchDomainSearchResult() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomainSearchResult
-
- searchForDataSets(SearchCriteria) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- searchForDataSets(SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Return all data sets matching a specified search criteria.
- searchForDataSets(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets matching specified search criteria.
- searchForDataSetsOnBehalfOfUser(String, SearchCriteria, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets matching specified search criteria and visible to user userId.
- searchForExperiments(SearchCriteria) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- searchForExperiments(SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Returns all experiments matching specified search criteria.
- searchForExperiments(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all experiments matching specified search criteria.
- searchForMaterials(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all material fulfilling specified search criteria.
- searchForSamples(SearchCriteria) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- searchForSamples(SearchCriteria, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- searchForSamples(SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Return all samples that match the search criteria.
- searchForSamples(SearchCriteria, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Return all samples that match the search criteria.
- searchForSamples(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all samples that match the search criteria.
- searchForSamples(String, SearchCriteria, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all samples that match the search criteria.
- searchForSamplesOnBehalfOfUser(String, SearchCriteria, EnumSet<SampleFetchOption>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all samples that match the search criteria and that a particular user is allowed to see.
- searchOnSearchDomain(String, String, String, Map<String, String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Searches on a search domain.
- SearchSubCriteria - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A specification of criteria for a subquery about a connected entity.
- SegmentedStoreUtils - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Utility methods for segmented stores.
- SegmentedStoreUtils() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils
-
- SegmentedStoreUtils.FilterOptions - Enum in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
- SERVER_URL_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Name of this service for which it is registered at the RPC name server.
- SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Name of this service for which it is registered at the RPC name server.
- SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IWebInformationService
-
Name of this service for which it is registered at the RPC name server.
- SERVICE_PROPERTIES_FILE - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
Location of service properties file.
- SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Application part of the URL to access this service remotely.
- SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Application part of the URL to access this service remotely.
- SESSION_WORKSPACE_ROOT_DIR_DEFAULT - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SessionWorkspaceUtil
-
- SESSION_WORKSPACE_ROOT_DIR_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SessionWorkspaceUtil
-
- SessionWorkspaceUtil - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Utility functions for session workspace.
- SessionWorkspaceUtil() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SessionWorkspaceUtil
-
- setAccessTimestamp(Date) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setAlignmentMatch(AlignmentMatch) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFileBlastSearchResultLocation
-
- setAlignmentMatch(AlignmentMatch) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityPropertyBlastSearchResultLocation
-
- setAttachmentHolderId(IObjectId) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setAutomaticCodeGeneration(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setBitScore(double) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.BlastScore
-
- setChecksumCRC32(Integer) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setChildReferences(List<Long>, Map<Long, Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setChildren(List<Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setChildrenCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setChosenFromList(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Set the term's code.
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setCodePrefix(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setComplete(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setContainedDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setContainedDataSets(List<DataSet>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setContainerDataSet(AbstractExternalData) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setContainerDataSet(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setContainerDatasetPermId(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setContainerOrNull(DataSet) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setDataSetCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setDataSetKind(DataSetKind) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- setDataSetOwnerIdentifier(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
- setDataSetOwnerType(NewDataSetDTO.DataSetOwnerType) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
- setDataSetProperties(List<NewProperty>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setDataSets(List<DataSet>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- setDataSetType(DataSetType) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setDataSetTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setDataSetTypeOrNull(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
- setDataSetTypeOrNull(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
- setDataSetTypes(List<String>) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- setDataStoreBaseUrl(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
- setDataStoreCode(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
- setDataStoreCode(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- setDataType(DataTypeCode) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setDeletedEntities(List<DeletedEntity>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- setDeletionDisallowed(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Set the term's description.
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
- setDinamic(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setDinamic(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
- setDirectory(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setDownloadLink(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setEmail(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setEntityKind(EntityKind) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
-
- setEntityKind(EntityKind) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- setEntityType(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
-
- setEntityType(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- setEvalue(double) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.BlastScore
-
- setExperiment(Experiment) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setExperimentIdentifier(ExperimentIdentifier) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
Sets experimentIdentifier
.
- setExperimentIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setExperimentIdentifierOrNull(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setExperimentIdentifiers(Set<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- setExperiments(List<Experiment>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- setExperimentTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setExternalCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setExternalDataManagementSystem(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setExternalDataManagementSystem(ExternalDataManagementSystem) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setExternalDataSetCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setExternalDataSetLink(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setExtractableData(ExtractableData) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setFetchOptions(DataSetFetchOptions) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- setFile(File) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
Set the file that contains the data set.
- setFileName(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setFileName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setFirstName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setId(long) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setId(long) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
- setIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFileSearchResultLocation
-
- setIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- setIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setIgnoredForShuffling(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- setIgnoredForShuffling(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- setIncoming(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- setIncoming(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- setInstanceCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setInstanceUUID(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setInternalNamespace(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setIsStub(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setKey(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- setLabel(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Set the term's label.
- setLabel(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setLabel(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomain
-
- setLabel(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
- setLabel(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- setLastModified(Date) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setLastName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setLinkDataSet(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setLinkSample(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setListable(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setMainDataSetPath(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- setMainDataSetPattern(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- setManaged(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setManaged(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
- setManagedInternally(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setMandatory(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setMaterialCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setMaterialProperties(Map<String, Material>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setMaterials(List<Material>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- setMaterialTypeIdentifier(MaterialTypeIdentifier) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setMaximumNumberOfRetries(int) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- setMetaproject(Metaproject) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- setModificationDate(Date) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setModifierEmail(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setModifierFirstName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setModifierLastName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setModifierUserId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
-
- setName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomain
-
- setName(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
- setNumberOfMismatches(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- setOperator(SearchCriteria.SearchOperator) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
-
Set the operator for combining MatchClause objects.
- setParameters(List<String>) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
- setParent(DataSetPathInfo) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setParentCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setParentDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
Sets the parent data sets of this data set.
- setParentDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
Sets the parent data sets of this data set.
- setParentDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setParentReferences(List<Long>, Map<Long, Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setParents(List<Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setPathInDataSet(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFileSearchResultLocation
-
- setPermId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
-
- setPermId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
-
- setPermId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setPermId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setPosition(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
-
- setPreviousTermOrdinal(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Set the position of predecessor term in the vocabulary.
- setProducerCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setProductionDate(Date) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
- setProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
- setProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setPropertyType(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityPropertySearchResultLocation
-
- setQueryEnd(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- setQueryStart(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- setReasonOrNull(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- setRegistrationDate(Date) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setRelativePath(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setResultLocation(ISearchDomainResultLocation) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomainSearchResult
-
- setRetrievedConnections(EnumSet<DataSet.Connections>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setRetrievedFetchOptions(EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setSample(Sample) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setSampleCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setSampleIdentifier(SampleIdentifier) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
Sets the sample identifier.
- setSampleIdentifier(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setSampleIdentifierOrNull(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setSampleProperties(IEntityProperty[]) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setSamples(List<Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- setSampleTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setSampleTypeId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setScore(double) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.BlastScore
-
- setScore(ISearchDomainResultScore) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomainSearchResult
-
- setSearchDomain(SearchDomain) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomainSearchResult
-
- setSequenceEnd(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- setSequenceStart(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- setServiceKey(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
- setShareId(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setShowContainer(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setShowInEditViews(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setShowInEditViews(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
- setShowParentMetaData(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setShowParents(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setShufflePriority(Share.ShufflePriority) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- setSizeInBytes(long) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setSpaceCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setSpaceCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setSpeedHint(int) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setStorageConfirmed(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setStorageConfirmed(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- setStub(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setStub(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setTerms(List<ControlledVocabularyPropertyType.VocabularyTerm>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
-
- setTerms(List<VocabularyTerm>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setTitle(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setTotalDatasetsCount(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- setTotalExperimentsCount(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- setTotalNumberOfGaps(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
-
- setTotalSamplesCount(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
-
- setType(AggregationServiceType) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
- setType(QueryTableColumnDataType) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
-
- setUnarchivingScratchShare(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- setUniqueSubcodes(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setUnmodifiableProperties(Set<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
- setUnmodifiableProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
- setUploadingUserEmail(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setUploadingUserId(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setUrlTemplate(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setUserId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setValidationPluginInfo(ValidationPluginInfo) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- setValue(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
-
- setVersion(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setVocabulary(Vocabulary) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
-
- setWaitingTimeBetweenRetries(int) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- setWaitingTimeBetweenRetriesIncreasingFactor(float) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- setWebAppSettings(WebAppSettings) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- setWebAppSettings(WebAppSettings) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Sets the persistent settings for a given custom web app.
- setWebAppSettings(String, WebAppSettings) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Sets the persistent settings for a given custom web app.
- setWithdrawShare(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- setWithdrawShare(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- Share - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Represents a share of a segmented store.
- Share(File, int, IFreeSpaceProvider) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- Share(SharesHolder, File, int, IFreeSpaceProvider) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- Share.ShufflePriority - Enum in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
different factors that have priority when moving a data set to the share.
- SHARE_PROPS_FILE - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ShareFactory
-
- ShareFactory - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
A factory that constructs
Share
objects.
- ShareFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ShareFactory
-
- ShareInfo - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
-
Information about a share.
- ShareInfo(String, long) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- shuffleDataSet(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Moves specified data set to specified share.
- SimpleFileBasePersistenceManager - Class in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
- SimpleFileBasePersistenceManager(File, String) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.content.SimpleFileBasePersistenceManager
-
Creates an instance for the specified file storing the object.
- Size - Class in ch.systemsx.cisd.openbis.dss.generic.shared.dto
-
- Size(int, int) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.dto.Size
-
- SpaceWithProjectsAndRoleAssignments - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Bean which represents a space, all its projects, and all its relevant role assignments
- SpaceWithProjectsAndRoleAssignments(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
-
Creates a new instance for the specified code.
- SpeedUtils - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Utility method for speed.
- SpeedUtils() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SpeedUtils
-
- StaticRetryConfiguration - Class in ch.systemsx.cisd.common.api.retry.config
-
- StaticRetryConfiguration() - Constructor for class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- Status - Class in ch.systemsx.cisd.common.exceptions
-
A class that holds the information about the status of an operation.
- StatusFlag - Enum in ch.systemsx.cisd.common.exceptions
-
The status of an operation.
- StatusWithResult<T> - Class in ch.systemsx.cisd.common.exceptions
-
A
Status
that can also hold a result.
- STOREROOT_DIR_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- SystemExitException - Exception in ch.systemsx.cisd.common.exceptions
-
Thrown by SystemExit
instead of plain RuntimeException
- SystemExitException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.SystemExitException
-
- validate(File) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner.NullValidationScriptRunner
-
- validate(File) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
- validateDataSet(NewDataSetDTO, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Validate a data set.
- validateDataSet(NewDataSetDTO, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- validateDataSet(NewDataSetDTO, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- validateDataSet(NewDataSetDTO, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Validates a data set.
- ValidationError - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
- ValidationError.ValidationErrorTarget - Enum in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
- ValidationPluginInfo - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Value object with name and optional description of a validation plugin.
- ValidationPluginInfo(String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
-
- ValidationScriptReader - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
A helper class that reads validation scripts.
- ValidationScriptReader() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptReader
-
- ValidationScriptRunner - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
- ValidationScriptRunner.NullValidationScriptRunner - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
- ValidationScriptRunner.NullValidationScriptRunner() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner.NullValidationScriptRunner
-
- valueOf(String) - Static method in enum ch.systemsx.cisd.common.exceptions.StatusFlag
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwnerType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError.ValidationErrorTarget
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils.FilterOptions
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share.ShufflePriority
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOption
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletionFetchOption
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleFetchOption
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchableEntityKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.CompareMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseFieldType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseTimeAttribute
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.SearchOperator
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumnDataType
-
Returns the enum constant of this type with the specified name.
- values() - Static method in enum ch.systemsx.cisd.common.exceptions.StatusFlag
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwnerType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError.ValidationErrorTarget
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils.FilterOptions
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share.ShufflePriority
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOption
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletionFetchOption
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleFetchOption
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchableEntityKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.CompareMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseFieldType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseTimeAttribute
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.SearchOperator
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumnDataType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- Vocabulary - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Immutable value object representing an openBIS vocabulary.
- Vocabulary(Vocabulary.VocabularyInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Creates a new instance with the provided initializer
- Vocabulary.VocabularyInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- Vocabulary.VocabularyInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- VocabularyTerm - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- VocabularyTerm(String, String, Long, Boolean, EntityRegistrationDetails) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-