Package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto

Class AlignmentMatch

java.lang.Object

ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch

All Implemented Interfaces:

Serializable

@JsonObject("AlignmentMatch")
public class AlignmentMatch
extends Object
implements Serializable

Alignment match between a sequence and a query.

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
AlignmentMatch()

Method Summary

Modifier and Type	Method	Description
int	getNumberOfMismatches()
int	getQueryEnd()
int	getQueryStart()
int	getSequenceEnd()
int	getSequenceStart()
int	getTotalNumberOfGaps()
void	setNumberOfMismatches(int numberOfMismatches)
void	setQueryEnd(int queryEnd)
void	setQueryStart(int queryStart)
void	setSequenceEnd(int sequenceEnd)
void	setSequenceStart(int sequenceStart)
void	setTotalNumberOfGaps(int totalNumberOfGaps)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

AlignmentMatch

public AlignmentMatch()

Method Details

getSequenceStart

public int getSequenceStart()

setSequenceStart

public void setSequenceStart(int sequenceStart)

getSequenceEnd

public int getSequenceEnd()

setSequenceEnd

public void setSequenceEnd(int sequenceEnd)

getQueryStart

public int getQueryStart()

setQueryStart

public void setQueryStart(int queryStart)

getQueryEnd

public int getQueryEnd()

setQueryEnd

public void setQueryEnd(int queryEnd)

getNumberOfMismatches

public int getNumberOfMismatches()

setNumberOfMismatches

public void setNumberOfMismatches(int numberOfMismatches)

getTotalNumberOfGaps

public int getTotalNumberOfGaps()

setTotalNumberOfGaps

public void setTotalNumberOfGaps(int totalNumberOfGaps)

toString

public String toString()

Overrides:

toString in class Object