All Classes and Interfaces
Class
Description
Abstract super class of
SearchDomain results based of openBIS entities.Super class of DTOs which hold registration data.
Alignment match between a sequence and a query.
A filter for
String values.Combining filters by logical AND.
General utility methods for working with annotations.
Immutable value object representing an attachment.
Attachment file name.
A
UserFailureException for authorization failure.Bds directory storage format perm id.
Some utilities around Java Beans.
A map that provides annotations for given annotation classes.
Marker interface for converter classes.
Wraps raw score, bit score and evalue of a BLAST search result.
Useful utilities for working with class filters.
Operations on classes using reflection.
A code.
An
AbstractRegistrationHolder extension which holds a code.An annotation that defines the type of collection and the type of elements to use when creating the collection in a bean context.
Builder of a comma-separated list of stringified objects.
The
ConfigurationFailureException is the super class of all exceptions that have their cause in an inappropriate configuration of the
system.Custom AS service code.
Custom DSS service code.
Immutable value object representing a data set.
Class used to initialize a new data set instance.
Identifies a data set by code.
Extension of
DataSetFileBlastSearchResultLocation for BLAST search.Data set file perm id.
Result location for a search in a sequence in a file in data set.
Enumeration of all possible data set kinds.
Data set perm id.
Identifies a data set by tech id.
Immutable value object representing a data set type.
Class used to initialize a new
DataSetType instance.A class that filters out data set types based on a whitelist or blacklist.
Data store perm id.
The data store URL for a set of data sets.
Available types of entity properties.
Types of deletion operations.
Entity kind.
The GWT counterpart to
.
invalid reference
ch.systemsx.cisd.openbis.generic.shared.dto.properties.EntityKindExtension of
EntityPropertySearchResultLocation for BLAST search.Result location for a search in a sequence in an entity property.
A class that encapsulates the details about entity registration.
Class used to initialize an EntityRegistrationDetails object.
Common attributes of all entity types.
Generic part of all entity type initializers.
Entity type perm id.
The
EnvironmentFailureException is the super class of all exceptions that have their cause in the software or hardware environment of
the system failing.This specifies whether files are written using their actual contents or some dummy bytes.
Provides utilities for manipulating and examining
Throwable objects.Immutable value object representing an experiment.
Class used to initialize a new experiment instance.
Experiment identifier.
Identifies an experiment by identifier.
Experiment perm id.
Identifies an experiment by perm id.
Identifies an experiment by tech id.
Immutable value object representing an experiment type.
Class used to initialize a new
ExperimentType instance.External data management system perm id.
Helper class for downloading files by using an instance of a
FastDownloadSession instance.Names of methods needed for remote access of
IDownloadServer:Names of parameters needed for remote access of
IDownloadServer:The result of a download session.
Options for fast downloading.
An annotation that can be used to mark methods that should not be considered as part of fetch options even though a method name may suggest that
(e.g.
An annotation that can be used to mark fields to be considered as part of fetch options and customize their handling.
Represents value together with
isModified flagAn exception indicating that an output file already exists.
An exception that is "high-level" in the sense that we have a pretty good understanding what the failure means in the context where the exception
has been thrown.
Implementation of the service stub factory based on Spring's HttpInvoker.
Utility methods for HTTP Invocations.
V3 application server API.
Holds information that uniquely identifies an attachment in openBIS.
Holds information that uniquely identifies an authorization group in openBIS.
A filter for
Class.A code holder.
Holds information that uniquely identifies a content copy in openBIS.
Executor of a
CustomASService.Holds information that uniquely identifies a custom AS service.
Holds information that uniquely identifies a custom DSS service.
Read-only interface for beans with a unique technical Id.
Holds information that uniquely identifies a data set file in openBIS.
Interface filters of
DataSet instances.Holds information that uniquely identifies a data set in openBIS.
Holds information that uniquely identifies a data set in openBIS.
Holds information that uniquely identifies a data store in openBIS.
V3 data store server API.
Holds information that uniquely identifies a deletion in openBIS.
Holds information that uniquely identifies an entity type in openBIS.
Holds information that uniquely identifies an event in openBIS.
Holds information that uniquely identifies an experiment in openBIS.
Holds information that uniquely identifies an experiment in openBIS.
Holds information that uniquely identifies an external data management system in openBIS.
Service for changing general informations.
Service for retrieving general informations.
Read-only interface for beans witch provide a code and a unique technical ID.
An identifier holder.
Holds information that uniquely identifies a locator type in openBIS.
Holds information that uniquely identifies a metaproject in openBIS.
A metaproject to register.
Description of updates which should be performed on a metaproject.
Exception that is thrown if the client can not talk to the server because of API version incompatibility.
Exception representing internal error in the program caused by programmer error.
Exception to be thrown when authentication of a service at another service fails.
Data provided to the system from another system is invalid.
This
UserFailureException extension signals that a session has expired.Holds information that uniquely identifies an object in openBIS.
Holds information that uniquely identifies an object in openBIS.
Marker interface for exceptions whose stack trace can be omitted in logs.
Holds information that uniquely identifies a person in openBIS.
Holds information that uniquely identifies a plugin (i.e.
Holds information that uniquely identifies a project in openBIS.
Holds information that uniquely identifies a project in openBIS.
Holds information that uniquely identifies a property assignment in openBIS.
Holds information that uniquely identifies a property type in openBIS.
Interface of DTOs having a modifier attribute.
Interface of DTOs having a registrator attribute.
The most generic interface for RPC invocations into openBIS.
A factory for creating proxies to RPC services on a data store server.
An Interface for finding out about the IRpcService interfaces supported by a server.
Holds information that uniquely identifies a sample in openBIS.
Holds information that uniquely identifies a sample in openBIS.
Marker interface specifying the location of search result on a search domain.
Basic interface of classes specifying a score of search domain result.
Holds information that uniquely identifies a semantic annotation in openBIS.
Interface of classes which know how to ping a specified remote service.
Factory which creates a stub for the specified service class.
Holds information that uniquely identifies a space in openBIS.
Holds information that uniquely identifies a storage format in openBIS.
Holds information that uniquely identifies a vocabulary in openBIS.
Holds information that uniquely identifies a vocabulary term in openBIS.
Description of the updates which should be performed on a vocabulary term.
Description of the updates which should be performed on the vocabulary.
Locator type perm id.
A
RuntimeException extension which almost clones given rootException without saving it as cause.Metaproject identifier representation.
Identifies a metaproject by identifier.
A metaproject registration implementation that returns null values for all fields.
A metaproject updates implementation that returns null values for all fields.
Identifies a metaproject by tech id.
Functions around
Method.The minimal minor version that a service needs to have in order to possess this method.
A modified short prefix
ToStringStyle which allows to work together with jmock and cruisecontrol.A value object representing a new vocabulary term to be created by the openBIS backend.
This is an extension to the
RuntimeException for unimplemented methods.An automatic stack trace extractor.
Base class for ids that identify objects by identifiers.
Base class for ids that identify objects by identifier.
Enumeration of object kinds.
Base class for ids that identify objects by a perm id.
Base class for ids that identify objects by perm id.
Base class for ids that identify objects by tech id.
Enumeration of operations which can be applied to an object.
The GWT equivalent PersonPE.
Person perm id.
Plugin (i.e.
Immutable value object representing a project.
Project identifier.
Identifies a project by identifier.
Project perm id.
Identifies a project by perm id.
Identifies a project by tech id.
Filter based on data set properties.
Property assignment perm id.
Immutable value object representing a property type.
Class used to initialize a new data set instance.
Immutable value object representing a data set type.
Class used to initialize a new data set instance.
Property type perm id.
Proprietary storage format perm id.
Relative location perm id.
Authorization role.
Immutable value object representing an authorization role.
Describes an RPC interface supported by the server.
Describes an RPC interface supported by the server.
Immutable value object representing a sample.
Class used to initialize a new sample instance.
Sample identifier.
Identifies a sample by identifier.
Sample perm id.
Identifies a sample by perm id.
Identifies a sample by tech id.
Immutable value object representing a sample type.
Class used to initialize a new
SampleType instance.An enum listing the different kinds of entities that are searchable.
A (mutable) object representing the specification of a search.
A MatchClause for checking that any of the properties or attributes equals a desired value.
A MatchClause for checking that any of the properties equals a desired value.
A MatchClause for checking that an attribute equals a desired value.
A specification of one field (either property or attribute) and desired value for that field.
An enum listing the different attributes that can be compared against.
An enum listing the different field types that can be compared against.
An enum listing the different attributes containing time values that can be compared against.
A MatchClause for checking that a property equals a desired value.
Operators for combining MatchClause objects.
A MatchClause for comparing a time attribute to a specified value.
A class specifying the search domain of a
SearchDomainSearchResult.Search option of a Search Domain.
Result of a search on a search domain.
A specification of criteria for a subquery about a connected entity.
Semantic annotation perm id.
Helper to find a remote service exported by Spring's HttpInvoker or any other way for which
an implementation of
IServiceStubFactory exists.Stores interface version.
Space perm id.
Space tech id.
Bean which represents a space, all its projects, and all its relevant role assignments
A class that holds the information about the status of an operation.
The status of an operation.
A
Status that can also hold a result.Storage format perm id.
Some utilities for
String.Thrown by
SystemExit instead of plain RuntimeExceptionTag code.
Tag perm id.
Technical identifier of an entity.
Filter which will be passed only by data sets with a data set type code matching a certain regular expression.
Used to signal the error of getting last modification time of a store item
The
UserFailureException is the super class of all exceptions that have their cause in an inappropriate usage of the system.Value object with name and optional description of a validation plugin.
Immutable value object representing an openBIS vocabulary.
Controlled vocabulary.
Vocabulary perm id.
A vocabulary term.
Vocabulary term perm id.
A map containing persistent settings for an openBIS web app.
A map containing persistent settings for an openBIS web app.