Index (server-original-data-store 7.0.0-rc.3+1777024182 API)

# Index

A C D E F G H I J L M N O P R S T U V W
All Classes and Interfaces|All Packages|Constant Field Values

## A

AbstractJavaDataSetRegistrationDropboxV2 - Class in ch.systemsx.cisd.etlserver.registrator.api.v2
  An abstract superclass for V2 dropboxes implemented in java
AbstractJavaDataSetRegistrationDropboxV2() - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.AbstractJavaDataSetRegistrationDropboxV2
AbstractTransactionState<T> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
  Abstract superclass for the states a DataSetRegistrationTransaction can be in.
AbstractTransactionState(DataSetRegistrationTransaction<T>) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AbstractTransactionState
AbstractTransactionState.LiveTransactionRollbackDelegate - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
  Rollback stack delegate that checks whether the given filesystem is accessible before letting the rollback continue.
addAttachment(String, String, String, byte[]) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IExperimentUpdatable
  Add a new attachment to this sample.
addAttachment(String, String, String, byte[]) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Sample
addAttachment(String, String, String, byte[]) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IProject
  Add a new attachment to this sample.
addAttachment(String, String, String, byte[]) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.ISample
  Add a new attachment to this sample.
addEntity(IMetaprojectContent) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IMetaproject
  add assignments to this metaproject
addEntity(IMetaprojectContent) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Metaproject
addTerm(IVocabularyTerm) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Vocabulary
addTerm(IVocabularyTerm) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IVocabulary
  adds a vocabulary term to the dictionary.
assignRoleToSpace(RoleWithHierarchy.RoleCode, ISpaceImmutable, List<String>, List<String>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
assignRoleToSpace(RoleWithHierarchy.RoleCode, ISpaceImmutable, List<String>, List<String>) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Give users and/or groups access privileges to a space.
assignRoleToSpace(RoleWithHierarchy.RoleCode, ISpaceImmutable, List<String>, List<String>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
AttachmentImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
AttachmentImmutable(Attachment) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AttachmentImmutable
AuthorizationGroupImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
AuthorizationGroupImmutable(AuthorizationGroup) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationGroupImmutable
AuthorizationHelper - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
AuthorizationHelper() - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationHelper
AuthorizationHelper.EntityKind - Enum Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
AuthorizationService - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
AuthorizationService(IEncapsulatedOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationService

## C

canGetContainedSamples() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
ch.systemsx.cisd.etlserver.registrator.api.v2 - package ch.systemsx.cisd.etlserver.registrator.api.v2
ch.systemsx.cisd.etlserver.registrator.api.v2.impl - package ch.systemsx.cisd.etlserver.registrator.api.v2.impl
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
  Throw an exception if the sample does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
  Throw an exception if the project does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
  Throw an exception if the sample does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SpaceImmutable
  Throw an exception if the project does not exist
cleanAfterRegistrationIfNecessary() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonDataSetRegistrationService
close() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
commit() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
  Commit the transaction.
commit() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonDataSetRegistrationServiceV2
  Commit any scheduled changes.
COMMIT_TRANSACTION_FUNCTION_NAME - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  The name of the function called after successful transaction commit.
containsTerm(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyImmutable
ConversionUtils - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
  Utility methods to convert transaction-layer DTOs to objects accepted by openBIS.
ConversionUtils() - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToDataSetBatchUpdatesDTO(DataSetUpdatable) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToDataSetUpdatesDTO(DataSetUpdatable) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToExperimentUpdateDTO(ExperimentUpdatable) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToMetaprojectsImmutable(Collection<Metaproject>) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToMetaprojectUpdatesDTO(Metaproject) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToNewContainerDataSet(DataSetRegistrationDetails<?>, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToNewExperiment(Experiment) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToNewExternalData(DataSetRegistrationDetails<?>, String, StorageFormat, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToNewLinkDataSet(DataSetRegistrationDetails<?>, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToNewMetaproject(Metaproject) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToNewProject(Project) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToNewSample(Sample) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToNewSpace(Space) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToProjectUpdateDTO(Project) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
convertToSampleUpdateDTO(Sample) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
createDataSetRegistrationService(DataSetFile, DataSetInformation, IDelegatedActionWithResult<Boolean>, ITopLevelDataSetRegistratorDelegate) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2
  Create a V2 registration service.
createDataSetRegistrationService(DataSetFile, DataSetInformation, IDelegatedActionWithResult<Boolean>, ITopLevelDataSetRegistratorDelegate) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
  Create a registration service that includes a python interpreter (we need the interpreter in the service so we can use it in error handling).
createJythonDataSetRegistrationServiceV2(DataSetFile, DataSetInformation, IDelegatedActionWithResult<Boolean>, ITopLevelDataSetRegistratorDelegate, IJythonInterpreter, TopLevelDataSetRegistratorGlobalState) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
  Create a Jython registration service that includes access to the interpreter.
createMetaproject(String, String, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Metaproject
createNewDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewDataSet() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new data set for registration in openBIS.
createNewDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewDataSet(DataSetRegistrationDetails<T>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewDataSet(IDataSetRegistrationDetailsFactory<T>, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewDataSet(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewDataSet(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new data set with the specified code.
createNewDataSet(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewDataSet(String, DataSetKind) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewDataSet(String, DataSetKind) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
createNewDataSet(String, DataSetKind) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewDataSet(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewDataSet(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new data set with the specified type and code.
createNewDataSet(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewDataSet(String, String, DataSetKind) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewDataSet(String, String, DataSetKind) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
createNewDataSet(String, String, DataSetKind) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewDirectory(IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewDirectory(IDataSet, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new directory and return the path.
createNewDirectory(IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewExperiment(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewExperiment(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new experiment to register with the openBIS AS.
createNewExperiment(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewFile(IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewFile(IDataSet, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new empty file and return the path.
createNewFile(IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewFile(IDataSet, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewFile(IDataSet, String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new empty file and return the path.
createNewFile(IDataSet, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewLink(IDataSet, String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewLink(IDataSet, String, String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new symbolic link and return the path.
createNewLink(IDataSet, String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewMetaproject(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewMetaproject(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Creates the new metaproject for the current user.
createNewMetaproject(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewMetaproject(String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewMetaproject(String, String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Creates the new metaproject for the specified user.
createNewMetaproject(String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewProject(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewProject(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new project to register with the openBIS AS.
createNewProject(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewProjectSampleWithGeneratedCode(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewProjectSampleWithGeneratedCode(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new project sample to register with the openBIS AS.
createNewProjectSampleWithGeneratedCode(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewSample(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewSample(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new sample to register with the openBIS AS.
createNewSample(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewSampleWithGeneratedCode(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewSampleWithGeneratedCode(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new sample to register with the openBIS AS.
createNewSampleWithGeneratedCode(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewSpace(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewSpace(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Create a new space to register with the openBIS AS.
createNewSpace(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createNewVocabularyTerm() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
createNewVocabularyTerm() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Creates a new vocabulary term, which has to be assigned to a `IVocabulary`.
createNewVocabularyTerm() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
createRegistrationDetails() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.ProgrammableDropboxObjectFactory
  Factory method that creates a new registration details object.

## D

DATA_SET - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationHelper.EntityKind
dataSet - Variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
DataSet<T> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
  A generic class that represents a data set for the registration API.
DataSet(DataSetRegistrationDetails<? extends T>, File, IEncapsulatedOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
DataSetImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
  A data set that has already been stored in openBIS.
DataSetImmutable(AbstractExternalData, IEncapsulatedBasicOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
DataSetRegistrationServiceV2<T> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2
DataSetRegistrationServiceV2(AbstractProgrammableTopLevelDataSetHandler<T>, DataSetFile, DataSetInformation, IDelegatedActionWithResult<Boolean>, ITopLevelDataSetRegistratorDelegate) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationServiceV2
DataSetRegistrationTransaction<T> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
  The implementation of a transaction.
DataSetRegistrationTransaction(File, File, File, DataSetRegistrationService<T>, IDataSetRegistrationDetailsFactory<T>, String) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
DataSetRegistrationTransactionV2Delegate - Class in ch.systemsx.cisd.etlserver.registrator.api.v2
DataSetRegistrationTransactionV2Delegate(DataSetRegistrationTransaction<?>) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
DataSetUpdatable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
  A data set already existing in the openBIS database, that is changed as part of the registration process of another data set.
DataSetUpdatable(DataSetImmutable) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
DataSetUpdatable(AbstractExternalData, IEncapsulatedBasicOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
deleteFile(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
DID_ENCOUNTER_SECONDARY_TRANSACTION_ERRORS_FUNCTION_NAME - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  The name of the function called when secondary transactions, DynamicTransactionQuery objects, fail.
didEntityOperationsSucceeded(TechId) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
didRollbackStorageAlgorithmRunner(DataSetStorageAlgorithmRunner<T>, Throwable, IDataSetOnErrorActionDecision.ErrorType) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
  Delegate method called by the `DataSetStorageAlgorithmRunner`.
doesUserHaveRole(String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationService

## E

equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
error(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDSSRegistrationLogger
error(String, Throwable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDSSRegistrationLogger
executeJythonScript(DataSetFile, String, JythonTopLevelDataSetHandlerV2.JythonDataSetRegistrationService<T>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
EXPERIMENT - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationHelper.EntityKind
ExperimentImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
ExperimentImmutable(Experiment) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
ExternalDataManagementSystem - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
ExternalDataManagementSystem(ExternalDataManagementSystem) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExternalDataManagementSystem
ExternalDataManagementSystemImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
ExternalDataManagementSystemImmutable(ExternalDataManagementSystem) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExternalDataManagementSystemImmutable

## F

FACTORY_VARIABLE_NAME - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
filterToVisible(IEncapsulatedOpenBISService, String, List<T>, IMapper<T, String>, AuthorizationHelper.EntityKind) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationHelper
filterToVisibleDatasets(String, List<IDataSetImmutable>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationService
filterToVisibleExperiments(String, List<IExperimentImmutable>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationService
filterToVisibleSamples(String, List<ISampleImmutable>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationService
findRollbackStacks(File) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction

## G

getAddress() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExternalDataManagementSystemImmutable
getAddressType() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExternalDataManagementSystemImmutable
getAllPropertyCodes() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getAllPropertyCodes() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getAttachmentContent(IExperimentImmutable, String, Integer) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getAttachmentContent(IExperimentImmutable, String, Integer) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Returns an experiment attachment content.
getAttachmentContent(IExperimentImmutable, String, Integer) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getAttachmentContent(IProjectImmutable, String, Integer) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getAttachmentContent(IProjectImmutable, String, Integer) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Returns a project attachment content.
getAttachmentContent(IProjectImmutable, String, Integer) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getAttachmentContent(ISampleImmutable, String, Integer) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getAttachmentContent(ISampleImmutable, String, Integer) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Returns a sample attachment content.
getAttachmentContent(ISampleImmutable, String, Integer) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getAuthorizationGroup() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.RoleAssignmentImmutable
getAuthorizationService() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getAuthorizationService() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
getAuthorizationService() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getChildrenDataSets() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getChildrenDataSets() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getClass(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.ProgrammableDropboxObjectFactory
  Returns the Java class for the given class name.
getCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationGroupImmutable
getCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExternalDataManagementSystemImmutable
getCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
getCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyImmutable
getCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTermImmutable
getContainedDataSetCodes() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getContainedDataSetCodes() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getContainedSamples() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getContainerDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getContainerDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getContainerDataSets() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getContainerDataSets() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getDatabaseQuery(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getDatabaseQuery(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Gets a database query object for the data source with the specified name.
getDatabaseQuery(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getDataSet(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getDataSet(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Deprecated.
  Use `SearchService.getDataSet(String)`
getDataSet(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getDataSet(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getDataSetCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getDataSetCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getDataSetForUpdate(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getDataSetForUpdate(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Get a data set from the openBIS AS for the purpose of modifying it.
getDataSetForUpdate(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getDataSetKind() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getDataSetKind() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getDataSets() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectAssignments
getDataSetStagingFolder() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getDataSetType() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getDataSetType() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getDataSetTypeWithPropertyTypes() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getDataSetTypeWithPropertyTypes() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getDataSetTypeWithPropertyTypes(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getDataSetTypeWithPropertyTypes(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getDataSetTypeWithPropertyTypes(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
getDescription() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AttachmentImmutable
getDescription() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationGroupImmutable
getDescription() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectImmutable
getDescription() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
getDescription() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SpaceImmutable
getDescription() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyImmutable
getDescription() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTermImmutable
getEntityId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getEntityId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getEntityId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
getEntityId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getEntityTypeCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable
getExperiment() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getExperiment() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getExperiment() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
getExperiment() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getExperiment(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getExperiment(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Deprecated.
  Use `SearchService.getExperiment(String)`
getExperiment(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getExperiment(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getExperimentByIdentifier(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getExperimentByPermId(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getExperimentForUpdate(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getExperimentForUpdate(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Get an experiment from the openBIS AS for the purpose of modifying it.
getExperimentForUpdate(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getExperimentIdentifier() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
getExperiments() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectAssignments
getExperimentType() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
getExternalCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getExternalCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getExternalData() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
  Only visible to internal implementation classes.
getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getExternalDataManagementSystem(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getExternalDataManagementSystem(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Get an external data management system from the openBIS AS.
getExternalDataManagementSystem(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getFileName() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AttachmentImmutable
getGlobalState() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getGlobalState() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
getGlobalState() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationGroupImmutable
getId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
getId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
getId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getIdentifier() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SpaceImmutable
getIncoming() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getIncoming() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Returns the file representing the logical incoming file.
getIncoming() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getIncomingDataSetFile() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getInterpreter() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonDataSetRegistrationService
getInterpreterFromService(DataSetRegistrationService<T>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
getLabel() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExternalDataManagementSystemImmutable
getLabel() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTermImmutable
getLogger() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getLogger() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Returns the logger object that logs messages to openbis operation log and data store server registration logs.
getLogger() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getMetaproject() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectAssignments
getMetaproject() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectImmutable
getMetaproject(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getMetaproject(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Only allowed when the user is available.
getMetaproject(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getMetaproject(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getMetaproject(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getMetaproject(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Only allowed when the user is not available.
getMetaproject(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getMetaprojectAssignments(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getModificationDate() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
getName() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectImmutable
getOpenBisServiceSessionToken() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getOpenBisServiceSessionToken() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Returns the currently used session token by the openBIS service
getOpenBisServiceSessionToken() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getOrderInContainer(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getOrderInContainer(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getOrdinal() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTermImmutable
getOwnerId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectImmutable
getParentDatasets() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getParentDatasets() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getParentSampleIdentifiers() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getPermId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
getPermId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
getPermId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getPositionInForms() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable
getProject() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
getProject() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getProject(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getProject(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Deprecated.
  Use `SearchService.getProject(String)`
getProject(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getProject(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getProjectByIdentifier(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getProjectByPermId(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getProjectForUpdate(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getProjectForUpdate(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Get an project from the openBIS AS for the purpose of modifying it.
getProjectForUpdate(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getProjectIdentifier() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
getPropertyTypeCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable
getPropertyTypeDescription() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable
getPropertyTypeLabel() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable
getPropertyValue(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getPropertyValue(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getPropertyValue(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
getPropertyValue(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getRecoveryHookAdaptor(File) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2
getRecoveryHookAdaptor(File) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
getRegistrationContext() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getRegistrationContext() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Return a registration context object which can be used to store information that needs to be accessed through the registration process.
getRegistrationContext() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getRegistrationDate() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
getRegistrationDetails() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getRoleSetCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.RoleAssignmentImmutable
getSample() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getSample() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getSample() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getSample(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getSample(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Deprecated.
  Use `SearchService.getSample(String)`
getSample(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getSample(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getSampleByIdentifier(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getSampleByPermId(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getSampleForUpdate(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getSampleForUpdate(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Get a sample from the openBIS AS for the purpose of modifying it.
getSampleForUpdate(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getSampleIdentifier() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getSamples() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectAssignments
getSampleType() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getScriptName() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable
getSearchService() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getSearchService() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Retrieve the search service for this transaction.
getSearchService() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getSearchServiceFilteredForUser(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getSearchServiceFilteredForUser(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Retrieve the search service for this transaction.
getSearchServiceFilteredForUser(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getSearchServiceUnfiltered() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getSearchServiceUnfiltered() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Retrieve the search service for this transaction.
getSearchServiceUnfiltered() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getSection() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable
getServerInformation() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getServerInformation() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Returns information about the openBIS server.
getServerInformation() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getSpace() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.RoleAssignmentImmutable
getSpace() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
getSpace() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SpaceImmutable
getSpace(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getSpace(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Deprecated.
  Use `SearchService.getSpace(String)`
getSpace(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getSpace(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getSpaceAdminUserId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Space
getSpaceCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
getSpaceCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SpaceImmutable
getSpeedHint() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
getSpeedHint() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
getStorageRecoveryManager() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getTerms() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Vocabulary
getTerms() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyImmutable
getThinDataSet(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getTitle() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AttachmentImmutable
getTransaction() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonDataSetRegistrationServiceV2
getUpdates() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
getUrl() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTermImmutable
getUrlTemplate() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExternalDataManagementSystemImmutable
getUrlTemplate() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyImmutable
getUser() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.RoleAssignmentImmutable
getUserId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getUserId() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Get the id of the user on whose behalf this registration transaction is performed.
getUserId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getUserId() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.UserImmutable
getV2DropboxProgram(DataSetRegistrationService<T>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2
getV2DropboxProgram(DataSetRegistrationService<T>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
getVersion() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AttachmentImmutable
getVocabulary() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyImmutable
getVocabulary(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getVocabulary(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Deprecated.
  Use `SearchService.getVocabulary(String)`
getVocabulary(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getVocabulary(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
getVocabularyForUpdate(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
getVocabularyForUpdate(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Get the vocabulary with given code
getVocabularyForUpdate(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
getVocabularyTerm() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTermImmutable

## H

handleDataSet(DataSetFile, DataSetRegistrationService<T>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2
handleDataSet(DataSetFile, DataSetRegistrationService<T>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
hashCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
hashCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
hashCode() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
hasRecoveryMarkerFile(File) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2
hasRecoveryMarkerFile(File) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2

## I

IDataSet - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
IDataSetRegistrationTransactionV2 - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
IDataSetUpdatable - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
IDSSRegistrationLogger - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
  Logging interface exposed through a dropbox api.
IExperiment - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
  Interface to specify an experiment to be created.
IExperimentUpdatable - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
  Interface to specify an experiment to be modified.
IExternalDataManagementSystem - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
IJavaDataSetRegistrationDropboxV2 - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
  The interface that V2 dropboxes must implement.
IMetaproject - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
INCOMING_DATA_SET_VARIABLE_NAME - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
  The name of the local variable under which the incoming directory is made available to the script.
info(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDSSRegistrationLogger
info(String, Throwable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDSSRegistrationLogger
IProject - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
  Interface to specify an experiment to be modified or created.
ISample - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
isChosenFromList() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyImmutable
isCommitted() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AbstractTransactionState
isCommitted() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
isCommittedOrRolledback() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
isContainedDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
isContainedDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
isContainerDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
isContainerDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
isDynamic() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable
isExistingExperiment() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
isExistingMetaproject() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectImmutable
isExistingProject() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
isExistingSample() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
isExistingSpace() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SpaceImmutable
isInternalNamespace() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyImmutable
  Deprecated.
  use `VocabularyImmutable.isManagedInternally()`
isLinkDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
isLinkDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
isManaged() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable
isManagedInternally() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyImmutable
isMandatory() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable
isMeasuredData() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
isMeasuredData() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
isNoFileDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
isNoFileDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
isOpenBIS() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExternalDataManagementSystemImmutable
ISpace - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
isPostRegistered() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
isPostRegistered() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
isRecoveryPending() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AbstractTransactionState
isRecoveryPending() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
isRetryFunctionDefined() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.AbstractJavaDataSetRegistrationDropboxV2
  A retry function is always defined.
isRetryFunctionDefined() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2
  Is a function defined that can be used to check if a failed registration should be retried? Primarily for use implementations of this interface that dispatch to dynamic languages.
isRetryFunctionDefined() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonAsJavaDataSetRegistrationDropboxV2Wrapper
isRolledback() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AbstractTransactionState
isRolledback() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
IVocabulary - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2
IVocabularyTerm - Interface in ch.systemsx.cisd.etlserver.registrator.api.v2

## J

JavaTopLevelDataSetHandlerV2<T> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2
JavaTopLevelDataSetHandlerV2(TopLevelDataSetRegistratorGlobalState) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2
JYTHON_VERSION - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
JythonAsJavaDataSetRegistrationDropboxV2Wrapper - Class in ch.systemsx.cisd.etlserver.registrator.api.v2
JythonAsJavaDataSetRegistrationDropboxV2Wrapper(IJythonInterpreter) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonAsJavaDataSetRegistrationDropboxV2Wrapper
JythonDataSetRegistrationService(AbstractProgrammableTopLevelDataSetHandler<T>, DataSetFile, DataSetInformation, IDelegatedActionWithResult<Boolean>, ITopLevelDataSetRegistratorDelegate, IJythonInterpreter, TopLevelDataSetRegistratorGlobalState) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonDataSetRegistrationService
JythonDataSetRegistrationServiceV2<T> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2
JythonDataSetRegistrationServiceV2(AbstractProgrammableTopLevelDataSetHandler<T>, DataSetFile, DataSetInformation, IDelegatedActionWithResult<Boolean>, ITopLevelDataSetRegistratorDelegate, IJythonInterpreter, TopLevelDataSetRegistratorGlobalState) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonDataSetRegistrationServiceV2
jythonInterpreterFactory - Variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
JythonTopLevelDataSetHandlerV2<T> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2
  A top-level data set handler that runs a python (jython) script to register data sets.
JythonTopLevelDataSetHandlerV2(TopLevelDataSetRegistratorGlobalState) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
  Constructor.
JythonTopLevelDataSetHandlerV2.JythonDataSetRegistrationService<T> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2
JythonTopLevelDataSetHandlerV2.JythonHookFunction - Enum Class in ch.systemsx.cisd.etlserver.registrator.api.v2
JythonTopLevelDataSetHandlerV2.ProgrammableDropboxObjectFactory<T> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2

## L

listAttachments(IExperimentImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
listAttachments(IExperimentImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Returns a list of experiment attachments with all versions.
listAttachments(IExperimentImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
listAttachments(IProjectImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
listAttachments(IProjectImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Returns a list of project attachments with all versions.
listAttachments(IProjectImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
listAttachments(ISampleImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
listAttachments(ISampleImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Returns a list of sample attachments with all versions.
listAttachments(ISampleImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
listAuthorizationGroups() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationService
listAuthorizationGroupsForUser(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationService
listExperiments(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
listMetaprojects() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
listMetaprojectsForEntities(Collection<? extends IMetaprojectContent>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
listMetaprojectsForEntity(IMetaprojectContent) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
listPropertiesDefinitionsForDataSetType(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
listPropertiesDefinitionsForExperimentType(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
listPropertiesDefinitionsForSampleType(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
listRoleAssignments() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationService
listUsersForAuthorizationGroup(IAuthorizationGroupImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationService
LiveTransactionRollbackDelegate(File) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AbstractTransactionState.LiveTransactionRollbackDelegate
logDssRegistrationResult() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonDataSetRegistrationServiceV2
logInfo(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
  Write something to the operation log.

## M

MAIL_CONTACT_ADDRESSES_KEY - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonDataSetRegistrationServiceV2
makeDataSetMutable(IDataSetImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
makeDataSetMutable(IDataSetImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Given an immutable data set, make it mutable.
makeDataSetMutable(IDataSetImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
makeExperimentMutable(IExperimentImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
makeExperimentMutable(IExperimentImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Given an immutable experiment, make it mutable.
makeExperimentMutable(IExperimentImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
makeProjectMutable(IProjectImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
makeProjectMutable(IProjectImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Given an immutable project, make it mutable.
makeProjectMutable(IProjectImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
makeSampleMutable(ISampleImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
makeSampleMutable(ISampleImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Given an immutable sample, make it mutable.
makeSampleMutable(ISampleImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
markReadyForRecovery(DataSetStorageAlgorithmRunner<T>, Throwable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
Metaproject - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
Metaproject(Metaproject) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Metaproject
metaprojectAssignments - Variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectAssignments
MetaprojectAssignments - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
MetaprojectAssignments(MetaprojectAssignments, IEncapsulatedBasicOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectAssignments
MetaprojectImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
  The read-only version of metaproject
MetaprojectImmutable(Metaproject) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectImmutable
MetaprojectImmutable(Metaproject, boolean) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectImmutable
moveFile(String, IDataSet) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
moveFile(String, IDataSet) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Move a file from into the root of a data set.
moveFile(String, IDataSet) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
moveFile(String, IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
moveFile(String, IDataSet, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Move a file to a specified location in a data set.
moveFile(String, IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction

## N

name - Variable in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction

## O

operationLog - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
operationLog - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonAsJavaDataSetRegistrationDropboxV2Wrapper

## P

parent - Variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AbstractTransactionState
POST_REGISTRATION_FUNCTION_NAME - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  The name of the function called just after successful registration of datasets in application server.
POST_STORAGE_FUNCTION_NAME - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  The name of the function called after successful transaction commit.
postMetadataRegistration(DataSetRegistrationContext) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.AbstractJavaDataSetRegistrationDropboxV2
  Default implementation is to do nothing.
postMetadataRegistration(DataSetRegistrationContext) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2
  Invoked just after the metadata is registered with the openBIS AS.
postMetadataRegistration(DataSetRegistrationContext) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonAsJavaDataSetRegistrationDropboxV2Wrapper
postStorage(DataSetRegistrationContext) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.AbstractJavaDataSetRegistrationDropboxV2
  Default implementation is to do nothing.
postStorage(DataSetRegistrationContext) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2
  Invoked after the data has been stored in its final location on the file system and the storage has been confirmed with the AS.
postStorage(DataSetRegistrationContext) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonAsJavaDataSetRegistrationDropboxV2Wrapper
PRE_REGISTRATION_FUNCTION_NAME - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  The name of the function called just before registration of datasets in application server.
preMetadataRegistration(DataSetRegistrationContext) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.AbstractJavaDataSetRegistrationDropboxV2
  Default implementation is to do nothing.
preMetadataRegistration(DataSetRegistrationContext) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2
  Invoked just before the metadata is registered with the openBIS AS.
preMetadataRegistration(DataSetRegistrationContext) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonAsJavaDataSetRegistrationDropboxV2Wrapper
process(IDataSetRegistrationTransactionV2) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2
  Invoked when new data is found in the incoming folder.
process(IDataSetRegistrationTransactionV2) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonAsJavaDataSetRegistrationDropboxV2Wrapper
PROCESS_FUNCTION - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  The name of the v2 process function, that is executed during the registration.
PROGRAM_CLASS_KEY - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2
ProgrammableDropboxObjectFactory(AbstractOmniscientTopLevelDataSetRegistrator.OmniscientTopLevelDataSetRegistratorState, DataSetInformation) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.ProgrammableDropboxObjectFactory
ProjectImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
ProjectImmutable(Project) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
ProjectImmutable(Project, boolean) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
PropertyAssignmentImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
PropertyAssignmentImmutable(EntityTypePropertyType<? extends EntityType>) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable

## R

registerDataSetsInApplicationServer(TechId, List<DataSetRegistrationInformation<T>>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
  Delegate method called by the `DataSetStorageAlgorithmRunner`.
removeEntity(IMetaprojectContent) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IMetaproject
  remove assigned entity from this metaproject
removeEntity(IMetaprojectContent) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Metaproject
revokeRoleFromSpace(RoleWithHierarchy.RoleCode, ISpaceImmutable, List<String>, List<String>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
revokeRoleFromSpace(RoleWithHierarchy.RoleCode, ISpaceImmutable, List<String>, List<String>) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Take away users and/or groups access privileges to a space.
revokeRoleFromSpace(RoleWithHierarchy.RoleCode, ISpaceImmutable, List<String>, List<String>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
RoleAssignmentImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
RoleAssignmentImmutable(RoleAssignment) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.RoleAssignmentImmutable
rollback() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
  Rollback any commands that have been executed.
ROLLBACK_PRE_REGISTRATION_FUNCTION_NAME - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  The name of the function to define to hook into the transaction rollback mechanism.
ROLLBACK_SERVICE_FUNCTION_NAME - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  The name of the function to define to hook into the service rollback mechanism.
ROLLBACK_TRANSACTION_FUNCTION_NAME - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  The name of the function to define to hook into the transaction rollback mechanism.
rollbackAndForgetTransaction() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonDataSetRegistrationServiceV2
  rolls back the existing transaction
rollbackDeadTransactions(File) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
  Check if there are any uncompleted transactions and roll them back.
rollbackPreRegistration(DataSetRegistrationContext, Throwable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.AbstractJavaDataSetRegistrationDropboxV2
  Default implementation is to do nothing.
rollbackPreRegistration(DataSetRegistrationContext, Throwable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2
  Invoked if the transaction is rolledback before the metadata is registered with the openBIS AS.
rollbackPreRegistration(DataSetRegistrationContext, Throwable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonAsJavaDataSetRegistrationDropboxV2Wrapper

## S

Sample - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
Sample(SampleImmutable) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Sample
Sample(Sample) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Sample
Sample(String, String) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Sample
SAMPLE - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationHelper.EntityKind
SampleImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
SampleImmutable(Sample) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
  Creates a new object that wraps the sample, which is assumed be an existing sample with all fetch options retrieved.
SampleImmutable(Sample, boolean) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
  Creates a new object that wraps the sample, which is assumed to have all fetch options retrieved.
SampleImmutable(Sample, EnumSet<SampleFetchOption>) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
  Creates a new object that wraps the sample, which is assumed be an existing sample.
SampleImmutable(Sample, EnumSet<SampleFetchOption>, boolean) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
SCRIPT_PATH_KEY - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
scriptFile - Variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
searchForDataSets(SearchCriteria) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
searchForDataSets(String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
searchForDataSets(String, String, String, boolean) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
searchForExperiments(SearchCriteria) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
searchForSamples(SearchCriteria) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
searchForSamples(String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
searchForSamples(String, String, String, boolean) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
searchForVocabulary(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
SearchService - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
SearchService(IEncapsulatedBasicOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SearchService
service - Variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
service - Variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
service - Variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
service - Variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MetaprojectAssignments
SERVICE_VARIABLE_NAME - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
  The name of the local variable under which the service is made available to the script.
setChosenFromList(boolean) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Vocabulary
setChosenFromList(boolean) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IVocabulary
setCode(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTerm
setCode(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IVocabularyTerm
  Set the code of the vocabulary term.
setContainedDataSetCodes(List<String>) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetUpdatable
  Set the codes for contained data sets.
setContainedDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setContainedDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
setContainer(ISampleImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Sample
setContainer(ISampleImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.ISample
  Set the container for this sample.
setDataSetKind(DataSetKind) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSet
setDataSetKind(DataSetKind) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setDataSetType(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSet
  Set the data set type.
setDataSetType(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setDescription(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IMetaproject
  set this metaproject description
setDescription(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Metaproject
setDescription(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Space
setDescription(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Vocabulary
setDescription(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTerm
setDescription(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IProject
  Set the project description.
setDescription(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.ISpace
  Set the space description.
setDescription(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IVocabulary
  Sets the vocabulary description.
setDescription(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IVocabularyTerm
  Set the description of the vocabulary term.
setExperiment(IExperimentImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetUpdatable
  Set the experiment for this data set.
setExperiment(IExperimentImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setExperiment(IExperimentImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
setExperiment(IExperimentImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Sample
setExperiment(IExperimentImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.ISample
  Set the experiment for this sample.
setExperiment(Experiment) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setExperimentType(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IExperiment
  Set the experiment type for this experiment.
setExternalCode(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetUpdatable
  Set the code from the external data management system
setExternalCode(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setExternalCode(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
setExternalDataManagementSystem(IExternalDataManagementSystemImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetUpdatable
  Set the external data management system
setExternalDataManagementSystem(IExternalDataManagementSystemImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setExternalDataManagementSystem(IExternalDataManagementSystemImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
setInternalNamespace(boolean) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Vocabulary
  Deprecated.
  use `VocabularyImmutable.isManagedInternally()`
setInternalNamespace(boolean) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IVocabulary
  Deprecated.
  use `IVocabulary.setManagedInternally(boolean)`
setLabel(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTerm
setLabel(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IVocabularyTerm
  Set the label of the vocabulary term.
setManagedInternally(boolean) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Vocabulary
setManagedInternally(boolean) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IVocabulary
  Set to `true` if the vocabulary is managed internally in openBIS.
setMeasuredData(boolean) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSet
  Set whether the data is measured or not.
setMeasuredData(boolean) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setOrdinal(Long) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTerm
setOrdinal(Long) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IVocabularyTerm
  Set position of the term in the context of its vocabulary.
setParentDatasets(List<String>) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetUpdatable
  Sets the parents of the dataset.
setParentDatasets(List<String>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setParentDatasets(List<String>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
setParentSampleIdentifiers(List<String>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Sample
setParentSampleIdentifiers(List<String>) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.ISample
  Set the parent samples of this sample.
setProject(IProjectImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Sample
setProject(IProjectImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.ISample
  Set the project for this sample.
setPropertyValue(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetUpdatable
  Set the value for a property.
setPropertyValue(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IExperimentUpdatable
  Set the value for a property.
setPropertyValue(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setPropertyValue(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
setPropertyValue(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Sample
setPropertyValue(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.ISample
  Set the value for a property.
setSample(ISampleImmutable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetUpdatable
  Set the sample for this data set.
setSample(ISampleImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setSample(ISampleImmutable) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
setSampleType(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Sample
setSampleType(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.ISample
  Set the type for this sample.
setSpeedHint(int) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSet
  Sets the speed hint for the data set.
setSpeedHint(int) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
setUrlTemplate(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Vocabulary
setUrlTemplate(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IVocabulary
  Sets a URL template (e.g a search query) that can display additional information for the concrete vocabulary terms.
setUserId(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
setUserId(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
  Set the id of the user on whose behalf this registration transaction is performed.
setUserId(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
SHOULD_RETRY_PROCESS_FUNCTION_NAME - Enum constant in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  The name of the function to define to hook into the transaction rollback mechanism.
shouldNotAddToFaultyPathsOrNull(File) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2
  V2 registration framework -- do not put files that are scheduled for recovery into the faulty paths.
shouldNotAddToFaultyPathsOrNull(File) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
  V2 registration framework -- do not put files that are scheduled for recovery into the faulty paths.
shouldRetryProcessing(DataSetRegistrationContext, Exception) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.AbstractJavaDataSetRegistrationDropboxV2
  Default implementation is to not retry processing.
shouldRetryProcessing(DataSetRegistrationContext, Exception) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IJavaDataSetRegistrationDropboxV2
  Given the problem with registration, should it be retried?
shouldRetryProcessing(DataSetRegistrationContext, Exception) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonAsJavaDataSetRegistrationDropboxV2Wrapper
shownInEditViews() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.PropertyAssignmentImmutable
Space - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
Space(String, String) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Space
SpaceImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
SpaceImmutable(Space) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SpaceImmutable
SpaceImmutable(Space, boolean) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SpaceImmutable
STATE_VARIABLE_NAME - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
  The name of the local variable under which the global state
SUCCESS_MESSAGE - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction

## T

TRANSACTION_VARIABLE_NAME - Static variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
  The name of the local variable under which the transaction is made available to the script.
tryDataSetContents() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
tryJythonFunction(IJythonInterpreter, JythonTopLevelDataSetHandlerV2.JythonHookFunction) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2

## U

UserImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
UserImmutable(Person) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.UserImmutable

## V

valueOf(String) - Static method in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationHelper.EntityKind
  Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  Returns the enum constant of this class with the specified name.
values() - Static method in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationHelper.EntityKind
  Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonHookFunction
  Returns an array containing the constants of this enum class, in the order they are declared.
verifyEvaluatorHookFunctions(IJythonInterpreter) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
Vocabulary - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
Vocabulary(Vocabulary) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Vocabulary
VocabularyImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
VocabularyImmutable(Vocabulary) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyImmutable
VocabularyTerm - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
VocabularyTerm() - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTerm
VocabularyTermImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
VocabularyTermImmutable(VocabularyTerm) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyTermImmutable

## W

warn(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDSSRegistrationLogger
warn(String, Throwable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDSSRegistrationLogger
willContinueRollbackAll(RollbackStack) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AbstractTransactionState.LiveTransactionRollbackDelegate

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